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Series GSE228567 Query DataSets for GSE228567
Status Public on May 03, 2023
Title Global transcriptional characterization of differentiating non-human primate (cynomolgus) iPAX7 iPS cells and comparison with their human counterpart
Organisms Macaca fascicularis; Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Pluripotent stem (PS) cells enable the scalable production of tissue-specific derivatives with therapeutic potential for various clinical applications, including muscular dystrophies. Given the similarity to human counterparts, the non-human primate (NHP) is an ideal preclinical model to evaluate several questions, including delivery, biodistribution and immune response. While the generation of human induced PS (iPS) cell-derived myogenic progenitors is well established, there has been no data for NHP counterparts, probably due to the lack of an efficient system to differentiate NHP iPS cells towards the skeletal muscle lineage. Here we report the generation of three independent Macaca fascicularis iPS cell lines and their myogenic differentiation using PAX7 conditional expression. Whole transcriptome analysis confirmed the successful sequential induction of mesoderm, paraxial mesoderm, and myogenic lineages. NHP myogenic progenitors efficiently gave rise to myotubes under appropriate in vitro differentiation conditions and engrafted in vivo into TA muscles of NSG and FKRP-NSG mice. Lastly, we explored the pre-clinical potential of these NHP myogenic progenitors in a single wild-type NHP recipient, demonstrating engraftment and characterizing the interaction with the host immune response. These studies establish an NHP model system in which to study iPS cell-derived myogenic progenitors.
 
Overall design Cynomolgous and human PAX7-inducible iPS cells were directed to differentiate into myogenic progenitors. Biological replicates were collected at multiple time points of the differentiation process (iPS cell stage, mesoder, paraxial mesoderm, myogenic progenitor and myotube) and used for gene expression analysis using RNA-seq.
 
Contributor(s) Magli A, Abrahante JE, Baik J, Ortiz-Cordero C, Perlingeiro RC
Citation https://doi.org/10.3390/cells12081147
Submission date Mar 30, 2023
Last update date Aug 04, 2023
Contact name Alessandro Magli
E-mail(s) alemagli@gmail.com
Organization name University of Minnesota
Department Medicine
Street address 2231 6th St SE
City Minneapolis
State/province MN
ZIP/Postal code 55455
Country USA
 
Platforms (2)
GPL21697 NextSeq 550 (Homo sapiens)
GPL28212 Illumina NovaSeq 6000 (Macaca fascicularis)
Samples (16)
GSM7124210 NHP_iPSC-Exp1
GSM7124211 NHP_iPSC-Exp2
GSM7124212 NHP_Mesoderm-Exp1
Relations
BioProject PRJNA950377

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE228567_raw_counts_homo_sap_RNAseq_PLZ_MP_vs_MT.txt.gz 401.9 Kb (ftp)(http) TXT
GSE228567_raw_counts_mac_fas_RNAseq_new_2_for_R.txt.gz 392.8 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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