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Series GSE228707 Query DataSets for GSE228707
Status Public on Jun 30, 2023
Title Bisulfite-free base-resolution sequencing of oxidized cytosines (APOBEC-seq) reveals a ubiquitous role of thymine DNA glycosylase in active gene promoters and an interaction with MBD3/NuRD
Organisms Homo sapiens; Mus musculus
Experiment type Methylation profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
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Submission date Apr 01, 2023
Last update date Jun 30, 2023
Contact name Moshe Szyf
E-mail(s) moshe.szyf@mcgill.ca
Phone 5143987107
Organization name McGill University
Department Pharmacology & Therapeutics
Street address 3655 Promenade Sir William Osler, Room 1309
City Montreal
State/province QC Quebec
ZIP/Postal code H3G1Y6
Country Canada
 
Platforms (2)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (55)
GSM7135334 APOBEC-sequencing of ChIP DNA for FLAG-TDG-N140A-CD, replicate 1
GSM7135335 APOBEC-sequencing of ChIP DNA for FLAG-TDG-N140A-CD, replicate 2
GSM7135336 APOBEC-sequencing of ChIP DNA for FLAG-TDG-N140A-CD, replicate 3
This SuperSeries is composed of the following SubSeries:
GSE228703 Bisulfite-free base-resolution sequencing of oxidized cytosines (APOBEC-seq) reveals a ubiquitous role of thymine DNA glycosylase in active gene promoters and an interaction with MBD3/NuRD [human APOBEC-seq]
GSE228704 Bisulfite-free base-resolution sequencing of oxidized cytosines (APOBEC-seq) reveals a ubiquitous role of thymine DNA glycosylase in active gene promoters and an interaction with MBD3/NuRD [human ChIP-seq]
GSE228705 Bisulfite-free base-resolution sequencing of oxidized cytosines (APOBEC-seq) reveals a ubiquitous role of thymine DNA glycosylase in active gene promoters and an interaction with MBD3/NuRD [mouse APOBEC-seq]
Relations
BioProject PRJNA951251

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE228707_RAW.tar 2.4 Gb (http)(custom) TAR (of COV, NARROWPEAK)
SRA Run SelectorHelp

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