|
| Status |
Public on Jul 19, 2010 |
| Title |
Microarray Analysis of Phytophthora sojae Gene Expression During Early Infection |
| Platform organism |
Glycine max |
| Sample organism |
Phytophthora sojae |
| Experiment type |
Expression profiling by array
|
| Summary |
P.sojae isolate P6954 - that is nearly identical with strain P6947 with the only exception that P6954 expresses Avr1b during infection is used in this study. 2 days post culture, P.sojae mycelia are inoculated onto 9 day old soybean hypocotyls of highly susceptible cultivar Sloan that were grown under natural sunlight inside a green house. Infected samples were harvested after 0, 3, 6 and 12 hours.
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| Overall design |
We analyzed 12 soybean arrays.
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| Contributor(s) |
Ferrera A, Tripathy S, Tyler B |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Jul 16, 2010 |
| Last update date |
Nov 22, 2016 |
| Contact name |
sucheta Tripathy |
| E-mail(s) |
sutripa@vbi.vt.edu
|
| Phone |
5402318138
|
| Organization name |
Virginia Tech
|
| Department |
Virginia Bioinformatics Institute
|
| Lab |
Tyler lab
|
| Street address |
1, Washington street
|
| City |
Blacksburg |
| State/province |
VA |
| ZIP/Postal code |
24061 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL4592 |
[Soybean] Affymetrix Soybean Genome Array |
|
| Samples (12)
|
| GSM566765 |
P. sojae strain P6954 - race 1: Treated - 3 Hours post inoculation - rep 1 |
| GSM566766 |
P. sojae strain P6954 - race 1: Control - zero time point - 0 Hours post inoculation - rep 2 |
| GSM566767 |
P. sojae strain P6954 - race 1: Control - zero time point - 0 Hours post inoculation - rep 3 |
| GSM566768 |
P. sojae strain P6954 - race 1: Treated - 12 Hours post inoculation - rep 2 |
| GSM566769 |
P. sojae strain P6954 - race 1: Treated - 6 Hours post inoculation - rep 1 |
| GSM566770 |
P. sojae strain P6954 - race 1: Treated - 12 Hours post inoculation - rep 1 |
| GSM566771 |
P. sojae strain P6954 - race 1: Treated - 3 Hours post inoculation - rep 2 |
| GSM566772 |
P. sojae strain P6954 - race 1: Treated - 6 Hours post inoculation - rep 2 |
| GSM566773 |
P. sojae strain P6954 - race 1: Treated - 3 Hours post inoculation - rep 3 |
| GSM566774 |
P. sojae strain P6954 - race 1: Treated - 6 Hours post inoculation - rep 3 |
| GSM566775 |
P. sojae strain P6954 - race 1: Treated - 12 Hours post inoculation - rep 3 |
| GSM566776 |
P. sojae strain P6954 - race 1: Control - zero time point - 0 Hours post inoculation - rep 1 |
|
| Relations |
| BioProject |
PRJNA127755 |
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