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| Status |
Public on Nov 24, 2023 |
| Title |
Cellular responses toatmospheric-pressure plasma in fission yeast |
| Organism |
Schizosaccharomyces pombe |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We characterized fission yeast cellular responses to a novel stress inducer, non-thermal atmospheric-pressure plasma.
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| Overall design |
We then performed gene expression profiling analysis using data obtained from RNA-seq at three time points after plasma irradiation and at one time point after hydrogen peroxide treatment with three biological replicates.
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| Contributor(s) |
Yamashita A, Otsubo Y, Johzuka K, Yoshimura S |
| Citation(s) |
37990810 |
| Submission date |
Apr 25, 2023 |
| Last update date |
Feb 25, 2024 |
| Contact name |
Akira Yamashita |
| E-mail(s) |
ymst@nibb.ac.jp
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| Organization name |
National Institute for Basic Biology
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| Street address |
Nishigonaka 38, Myodaiji
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| City |
Okazaki |
| State/province |
Aichi |
| ZIP/Postal code |
444-8585 |
| Country |
Japan |
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| Platforms (1) |
| GPL13988 |
Illumina HiSeq 2000 (Schizosaccharomyces pombe) |
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| Samples (15)
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| GSM7225476 |
plasma, 10min, bio rep1 |
| GSM7225477 |
plasma, 10min, bio rep2 |
| GSM7225478 |
plasma, 10min, bio rep3 |
| GSM7225479 |
plasma, 15min, bio rep1 |
| GSM7225480 |
plasma, 15min, bio rep2 |
| GSM7225481 |
plasma, 15min, bio rep3 |
| GSM7225482 |
plasma, 30min, bio rep1 |
| GSM7225483 |
plasma, 30min, bio rep2 |
| GSM7225484 |
plasma, 30min, bio rep3 |
| GSM7225485 |
H2O2 treatment, bio rep1 |
| GSM7225486 |
H2O2 treatment, bio rep2 |
| GSM7225487 |
H2O2 treatment, bio rep3 |
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| Relations |
| BioProject |
PRJNA961650 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE230503_H2O2_count.txt.gz |
133.4 Kb |
(ftp)(http) |
TXT |
| GSE230503_plasma_count.txt.gz |
233.0 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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