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Series GSE231574 Query DataSets for GSE231574
Status Public on Dec 15, 2023
Title DNA methylation profiling of phyllodes tumours determines a signature of malignancy and delineates from metaplastic breast carcinoma
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Genome wide DNA methylation profiling of phyllodes tumour, fibroadenoma and metaplastic breast cancer samples. The Illumina Infinium Methylation EPIC v1.0 BeadChip Array was used to obtain DNA methylation profiles across approximately 866,000 CpGs from primary tumours. Samples included a range of grades of phyllodes tumours (n=29), fibroadenoma (n=2), and metaplastic breast cancer (n=2).
 
Overall design Bisulphite converted DNA from the 33 samples were hybridised to the Illumina Infinium MethylationEPIC v1.0 BeadChip Array
Web link https://doi.org/10.1002/path.6250
 
Contributor(s) Meyer B, Pidsley R
Citation(s) 38300122
Submission date May 03, 2023
Last update date Feb 05, 2024
Contact name Braydon Meyer
E-mail(s) braydonmeyer@gmail.com
Organization name Garvan Institute of Medical Research
Department Genetics and Epigenetics
Lab Epigenetics Research
Street address 384 Victoria St, Darlinghurst
City Sydney
State/province NSW
ZIP/Postal code 2010
Country Australia
 
Platforms (1)
GPL21145 Infinium MethylationEPIC
Samples (33)
GSM7291057 Genomic DNA from Phyllodes Tumour 1
GSM7291058 Genomic DNA from Phyllodes Tumour 2
GSM7291059 Genomic DNA from Phyllodes Tumour 3
Relations
BioProject PRJNA966965

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE231574_RAW.tar 615.9 Mb (http)(custom) TAR (of IDAT)
GSE231574_beta_detp.csv.gz 317.5 Mb (ftp)(http) CSV
GSE231574_raw_detp.csv.gz 266.1 Mb (ftp)(http) CSV
GSE231574_samplesPhyllodes.csv.gz 551 b (ftp)(http) CSV
Processed data are available on Series record
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