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Series GSE231586 Query DataSets for GSE231586
Status Public on Jun 21, 2024
Title Spatially resolved transcriptome of brain white matter brain lesions of a patient with progressive multiple sclerosis
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Different lesion types were microdissected out from snap-frozen white matter and placed on visium slides. Optimization of RNA release and visualization with Nikon Ecclipse Ti2 were followed by barcoded recover, library preparation and sequencing.
 
Overall design spatial transcriptomics
 
Contributor(s) Elkjaer ML, Hartebrodt A
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Submission date May 03, 2023
Last update date Jun 22, 2024
Contact name Anne Hartebrodt
E-mail(s) anne.hartebrodt@fau.de
Organization name University of Southern Denmark
Street address Campusvej 55
City Odense
ZIP/Postal code 5230
Country Denmark
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (8)
GSM7291257 CA_2A, spatial transciptomics
GSM7291258 CA_2B, spatial transciptomics
GSM7291259 CA_2C, spatial transciptomics
This SubSeries is part of SuperSeries:
GSE231587 Progressive multiple sclerosis
Relations
BioProject PRJNA967121

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE231586_RAW.tar 47.3 Mb (http)(custom) TAR (of H5, JPG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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