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| Status |
Public on May 01, 2024 |
| Title |
SETD2 Mutations Do Not Contribute to Clonal Fitness in Response to Chemotherapy in Childhood B Acute Lymphoblastic Leukemia |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
May 04, 2023 |
| Last update date |
May 01, 2024 |
| Contact name |
Sonali Narang |
| E-mail(s) |
sonali.narang@nyulangone.org
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| Phone |
5169652665
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| Organization name |
NYU Langone
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| Street address |
435 east 30th street
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| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10016 |
| Country |
USA |
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| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (32)
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| GSM7299436 |
697 cells, sgRNA empty vector control, biol rep1 |
| GSM7299438 |
697 cells, sgRNA empty vector control, biol rep2 |
| GSM7299439 |
697 cells, sgRNA empty vector control, biol rep3 |
| GSM7299440 |
697 cells, sgRNA SETD2 clone BM_B, biol rep1 |
| GSM7299441 |
697 cells, sgRNA SETD2 clone BM_B, biol rep2 |
| GSM7299442 |
697 cells, sgRNA SETD2 clone BM_B, biol rep3 |
| GSM7299443 |
KOPN cells, sgRNA empty vector control, biol rep1 |
| GSM7299445 |
KOPN cells, sgRNA empty vector control, biol rep2 |
| GSM7299446 |
KOPN cells, sgRNA empty vector control, biol rep3 |
| GSM7299447 |
KOPN cells, sgRNA SETD2 clone BA, biol rep1 |
| GSM7299448 |
KOPN cells, sgRNA SETD2 clone BA, biol rep2 |
| GSM7299449 |
KOPN cells, sgRNA SETD2 clone BA, biol rep3 |
| GSM7299597 |
697 cells, sgRNA empty vector control, ATAC, biol rep1 |
| GSM7299598 |
697 cells, sgRNA empty vector control, ATAC, biol rep2 |
| GSM7299599 |
697 cells, sgRNA SETD2 clone BM_B, ATAC, biol rep1 |
| GSM7299601 |
697 cells, sgRNA SETD2 clone BM_B, ATAC, biol rep2 |
| GSM7299603 |
KOPN cells, sgRNA empty vector control, ATAC, biol rep1 |
| GSM7299604 |
KOPN cells, sgRNA empty vector control, ATAC, biol rep2 |
| GSM7299605 |
KOPN cells, sgRNA SETD2 clone BA, ATAC, biol rep1 |
| GSM7299606 |
KOPN cells, sgRNA SETD2 clone BA, ATAC, biol rep2 |
| GSM7299651 |
KOPN cells, sgRNA empty vector control, single cell clone F9 |
| GSM7299652 |
KOPN cells, sgRNA empty vector control, single cell clone B10 |
| GSM7299653 |
KOPN cells, sgRNA empty vector control, single cell clone H12 |
| GSM7299654 |
KOPN cells, sgRNA empty vector control, single cell clone F9 after treatment |
| GSM7299655 |
KOPN cells, sgRNA empty vector control, single cell clone B10 after treatment |
| GSM7299656 |
KOPN cells, sgRNA empty vector control, single cell clone H12 after treatment |
| GSM7299657 |
KOPN cells, sgRNA SETD2 clone BA, single cell clone A1 |
| GSM7299658 |
KOPN cells, sgRNA SETD2 clone BA, single cell clone A3 |
| GSM7299659 |
KOPN cells, sgRNA SETD2 clone BA, single cell clone A6 |
| GSM7299660 |
KOPN cells, sgRNA SETD2 clone BA, single cell clone A1 after treatment |
| GSM7299661 |
KOPN cells, sgRNA SETD2 clone BA, single cell clone A3 after treatment |
| GSM7299662 |
KOPN cells, sgRNA SETD2 clone BA, single cell clone A6 after treatment |
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| This SuperSeries is composed of the following SubSeries: |
| GSE231720 |
SETD2 Mutations Do Not Contribute to Clonal Fitness in Response to Chemotherapy in Childhood B Acute Lymphoblastic Leukemia (RNA-Seq) |
| GSE231721 |
SETD2 Mutations Do Not Contribute to Clonal Fitness in Response to Chemotherapy in Childhood B Acute Lymphoblastic Leukemia (ATAC-Seq) |
| GSE231723 |
SETD2 Mutations Do Not Contribute to Clonal Fitness in Response to Chemotherapy in Childhood B Acute Lymphoblastic Leukemia (WES) |
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| Relations |
| BioProject |
PRJNA967350 |
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