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| Status |
Public on Jun 27, 2023 |
| Title |
Effect of cyclic dinucleotides produced by cGAS-like receptors on gene expression in Crassostrea virginica |
| Organism |
Crassostrea virginica |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We performed transcriptime analysis (RNA-seq) in the stony coral Crassostrea virginica treated with different nucleotide messengers produced by cGLRs.
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| Overall design |
Several spicemens from two colonies of Crassostrea virginica were incubated with 250 µM of 3'3'-cUA or 2'3'-cGAMP in seawater or seawater control for 18h and subjected to RNA-seq analysis.
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| Contributor(s) |
Li Y, Elk A, Levy S, Mass T, Sebe-Pedros A, Kranzusch PJ |
| Citation(s) |
37379839 |
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| Submission date |
May 09, 2023 |
| Last update date |
Sep 27, 2023 |
| Contact name |
Yao Li |
| E-mail(s) |
yaoli0086@gmail.com
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| Organization name |
Dana-Farber Cancer Institute
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| Street address |
1 Jimmy Fund Way, SM512
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| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
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| Platforms (1) |
| GPL33398 |
Illumina HiSeq 3000 (Crassostrea virginica) |
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| Samples (24)
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| GSM7311868 |
C. virginica, 2'3'-cGAMP, 6h, rep 4 |
| GSM7311869 |
C. virginica, 2'3'-cGAMP, 12h, rep 1 |
| GSM7311870 |
C. virginica, 2'3'-cGAMP, 12h, rep 2 |
| GSM7311871 |
C. virginica, 2'3'-cGAMP, 12h, rep 3 |
| GSM7311872 |
C. virginica, 2'3'-cGAMP, 12h, rep 4 |
| GSM7311873 |
C. virginica, 2'3'-cUA, 6h, rep 1 |
| GSM7311874 |
C. virginica, 2'3'-cUA, 6h, rep 2 |
| GSM7311875 |
C. virginica, 2'3'-cUA, 6h, rep 3 |
| GSM7311876 |
C. virginica, 2'3'-cUA, 6h, rep 4 |
| GSM7311877 |
C. virginica, 2'3'-cUA, 12h, rep 1 |
| GSM7311878 |
C. virginica, 2'3'-cUA, 12h, rep 2 |
| GSM7311879 |
C. virginica, 2'3'-cUA, 12h, rep 3 |
| GSM7311880 |
C. virginica, 2'3'-cUA, 12h, rep 4 |
| GSM7311881 |
C. virginica, control, 6h, rep 1 |
| GSM7311882 |
C. virginica, control, 6h, rep 2 |
| GSM7311883 |
C. virginica, control, 6h, rep 3 |
| GSM7311884 |
C. virginica, control, 6h, rep 4 |
| GSM7311885 |
C. virginica, control, 12h, rep 1 |
| GSM7311886 |
C. virginica, control, 12h, rep 2 |
| GSM7311887 |
C. virginica, control, 12h, rep 3 |
| GSM7311888 |
C. virginica, control, 12h, rep 4 |
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| Relations |
| BioProject |
PRJNA970795 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE232087_C_virginica_gene_annotation.xls.gz |
1.9 Mb |
(ftp)(http) |
XLS |
| GSE232087_C_virginica_gene_sequence.fasta.gz |
24.8 Mb |
(ftp)(http) |
FASTA |
| GSE232087_Crassostrea_virginica_gene_count.tsv.gz |
1.0 Mb |
(ftp)(http) |
TSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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