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Series GSE232184 Query DataSets for GSE232184
Status Public on May 15, 2023
Title Rat cytomegalovirus efficiently replicates within dendritic cells and affects both surface marker and gene expression
Organisms Rattus norvegicus; Murid betaherpesvirus 8
Experiment type Expression profiling by high throughput sequencing
Summary Dendritic cells (DC) play a crucial role in generating and maintaining antiviral immunity. While DC are implicated in the antiviral defense by inducing T cell responses, they can also become infected by Cytomegalovirus (CMV). CMV is not only highly species-specific but also specialized in evading immune protection, and this specialization is in part due to characteristic genes encoded by a given virus. Here, we investigated whether RCMV can infect XCR1+ DC and if infection of DC alters the expression of cell surface markers and migration behavior. We demonstrate that wild-type RCMV and a _vxcl1 mutant virus infect splenic rat DC ex vivo and identify viral assembly compartments. Replication-competent RCMV reduced XCR1 and MHCII surface expression. Further, gene expression of infected DC was analyzed by single cell RNA-sequencing. RCMV infection reverted a state of DC activation that was induced by DC cultivation. On the functional level, we observed impaired chemotactic activity of infected XCR1+ DC compared to mock treated cells. We therefore speculate that as a result of RCMV infection, DC exhibit diminished XCR1 expression and are thereby inhibited from the lymphocyte crosstalk.
 
Overall design Dendritic cells were isolated from rat spleens, and RNA extracted immediately (input samples) or after 24 hours of treatment as indicated.
 
Contributor(s) Madela-Mönchinger JC, Wolf SA, Wyler E, Bauer A, Möller L, Juranić Lisnić V, Landthaler M, Malyshkina A, Voigt S
Citation(s) 38077365
Submission date May 10, 2023
Last update date Feb 22, 2024
Contact name Emanuel Wyler
E-mail(s) emanuel.wyler@mdc-berlin.de
Phone +49 30 9406 3009
Organization name Max Delbrück Center for Molecular Medicine
Department Berlin Institute for Medical Systems Biology
Lab RNA Biology and Posttranscriptional Regulation
Street address Robert Roessle Str 10
City Berlin
ZIP/Postal code 13125
Country Germany
 
Platforms (2)
GPL22396 Illumina HiSeq 4000 (Rattus norvegicus)
GPL34220 Illumina HiSeq 4000 (Murid betaherpesvirus 8; Rattus norvegicus)
Samples (15)
GSM7317552 RCMV_Input_1
GSM7317553 RCMV_Input_2
GSM7317554 RCMV_Input_3
Relations
BioProject PRJNA971185

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Supplementary file Size Download File type/resource
GSE232184_readcounts.tsv.gz 588.7 Kb (ftp)(http) TSV
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Processed data are available on Series record

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