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Series GSE232216 Query DataSets for GSE232216
Status Public on Oct 19, 2023
Title Light-Assisted Single-Stranded Open-Chromatin Analysis in K562 and Spatially Localized Neuronal Single Cells
Organisms Homo sapiens; Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Third-party reanalysis
Other
Methylation profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 37963886
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 MH110185 IPSC phenotype, mitochondrial haplotype and psychosis in 22q11 deletion syndrome CHILDREN'S HOSPITAL OF PHILADELPHIA Stewart A Anderson
RM1 HG010023 Center for Sub-Cellular Genomics UNIVERSITY OF PENNSYLVANIA JAMES H EBERWINE
RM1 HG010023 Center for Sub-Cellular Genomics UNIVERSITY OF PENNSYLVANIA JUNHYONG KIM
U01 MH098953 Role of Single Cell mRNA Variation in Systems Associated Electrically Excitable C UNIVERSITY OF PENNSYLVANIA JAMES H EBERWINE
U01 MH098953 Role of Single Cell mRNA Variation in Systems Associated Electrically Excitable C UNIVERSITY OF PENNSYLVANIA JUNHYONG KIM
Submission date May 10, 2023
Last update date May 02, 2024
Contact name Junhyong Kim
Organization name University of Pennsylvania
Department Biology
Lab Junhyong Kim
Street address 433 S University Avenue
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platforms (3)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (445)
GSM7298689 HumanInterneuronCulturePositiveSingle, rep1
GSM7298690 HumanInterneuronCulturePositiveSingle, rep2
GSM7298692 HumanInterneuronCulturePositiveSingle, rep3
This SuperSeries is composed of the following SubSeries:
GSE231719 Light-Assisted Single-Stranded DNA Open-Chromatin Analysis in Single Spatially Localized Neuronal Cells Identifies the Capacity of Endogenous DNA to Act Catalytically [CHEX-seq]
GSE231725 Single-cell RNA-seq of astrocytes and neurons from primary culture of the mouse brain and of acute slice of interneurons from Patch-clamp pipette [RNA-seq mouse brain]
GSE232215 K562 and human brain transcriptomes, and various epigenomes from K562 and human/mouse brain curated from public databases and re-analyzed for comparison with the single-stranded DNA open-chromatin detected by CHEX-seq
Relations
BioProject PRJNA971223

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE232216_RAW.tar 49.3 Mb (http)(custom) TAR (of BED)
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