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Series GSE232348 Query DataSets for GSE232348
Status Public on May 01, 2024
Title Proteasome gene expression is controlled by the coordinated functions of multiple transcription factors
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Proteasome activity is crucial for cellular integrity, but how tissues adjust proteasome content in response to catabolic stimuli is uncertain. Here, we demonstrate that transcriptional coordination by multiple transcription factors is required to increase proteasome content and activate proteolysis in catabolic states. Using denervated mouse muscle as a model system for accelerated proteolysis in vivo, we reveal that a two-phase transcriptional program activates genes encoding proteasome subunits and assembly chaperones to boost an increase in proteasome content. Initially, gene induction is necessary to maintain basal proteasome levels, and in a more delayed phase (7-10 d after denervation) it stimulates proteasome assembly to meet cellular demand for excessive proteolysis. Intriguingly, the transcription factors PAX4 and α-PALNRF-1 control the expression of proteasome among other genes in a combinatorial manner, driving cellular adaptation to muscle denervation. Consequently, PAX4 and α-PALNRF-1 represent new therapeutic targets to inhibit proteolysis in catabolic diseases (e.g. type-2 diabetes, cancer).
 
Overall design WT and transgenic animals are subjected to muscle denervation and gene expression analyses are performed on their muscles.
 
Contributor(s) Cohen S, Mandel-Gutfreund Y
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Submission date May 11, 2023
Last update date May 01, 2024
Contact name Tamar Lahav
E-mail(s) lahav008@gmail.com
Organization name Technion
Department Biology
Street address Zor
City Haifa
ZIP/Postal code 20345
Country Israel
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (23)
GSM7329035 WT Con Innervated 1
GSM7329036 WT Con Innervated 2
GSM7329037 WT Con Innervated 3
Relations
BioProject PRJNA971654

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE232348_Deseq_and_nurm_run2.csv.gz 1.7 Mb (ftp)(http) CSV
GSE232348_Deseq_output.xlsx 4.5 Mb (ftp)(http) XLSX
GSE232348_Final_results_FullSet_sortedPADJ_21.10.15.xlsx 12.2 Mb (ftp)(http) XLSX
GSE232348_out_table_first_run_1.11.csv.gz 902.1 Kb (ftp)(http) CSV
GSE232348_raw_counts_2015_final.txt.gz 1.5 Mb (ftp)(http) TXT
GSE232348_raw_counts_run1.xlsx 4.5 Mb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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