 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on May 25, 2023 |
| Title |
Bulk RNA-seq analyses of mandibular condylar cartilage in a post-traumatic temporomandibular joint osteoarthritis rabbit model |
| Organism |
Oryctolagus cuniculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We performed gene expression profiling analysis using data obtained from RNA-seq of 2 different cells from post-traumatic temporomandibular joint osteoarthritis model to investigate the signaling pathways critical for cellular functions during temporomandibular joint osteoarthritis pathology.
|
| |
|
| Overall design |
Comparative gene expression profiling analysis of RNA-seq data for control and osteoarthritis model in superficial zone cells and condylar cartilage cells from temporomandibular joints.
|
| |
|
| Contributor(s) |
Tosa I, Ruscitto A, Wang Z, Chen KZ, Ono M, Embree MC |
| Citation(s) |
36891610 |
| Submission date |
May 19, 2023 |
| Last update date |
May 25, 2023 |
| Contact name |
Ikue Tosa |
| E-mail(s) |
it2318@cumc.columbia.edu
|
| Organization name |
Columbia University
|
| Department |
College of Dental Medicine
|
| Lab |
Embree Lab
|
| Street address |
P&S 16-440 630 W. 168th St.
|
| City |
New York |
| State/province |
New York |
| ZIP/Postal code |
10032 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL25392 |
Illumina HiSeq 4000 (Oryctolagus cuniculus) |
|
| Samples (12)
|
| GSM7385136 |
Control, Superficial zone cells, Biol rep 1 |
| GSM7385137 |
Control, Superficial zone cells, Biol rep 2 |
| GSM7385138 |
Control, Superficial zone cells, Biol rep 3 |
| GSM7385139 |
Control, Condylar cartilage cells, Biol rep 1 |
| GSM7385140 |
Control, Condylar cartilage cells, Biol rep 2 |
| GSM7385141 |
Control, Condylar cartilage cells, Biol rep 3 |
| GSM7385142 |
Osteoarthritis, Superficial zone cells, Biol rep 1 |
| GSM7385143 |
Osteoarthritis, Superficial zone cells, Biol rep 2 |
| GSM7385144 |
Osteoarthritis, Superficial zone cells, Biol rep 3 |
| GSM7385145 |
Osteoarthritis, Condylar cartilage cells, Biol rep 1 |
| GSM7385146 |
Osteoarthritis, Condylar cartilage cells, Biol rep 2 |
| GSM7385147 |
Osteoarthritis, Condylar cartilage cells, Biol rep 3 |
|
| Relations |
| BioProject |
PRJNA974255 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE232867_00.DEGs_Out_TPM.xlsx |
7.1 Mb |
(ftp)(http) |
XLSX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
|
|
|
|
 |
Less...
More...