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Series GSE232902 Query DataSets for GSE232902
Status Public on Jun 30, 2023
Title Transcriptomic analysis of long wavelength-sensing cones of zebrafish retina
Organism Danio rerio
Experiment type Expression profiling by high throughput sequencing
Summary The tandemly duplicated zebrafish lws opsin genes and the human LWS/MWS opsin genes are evolved from a common ancestral long wavelength-sensing opsin gene. This dataset shows that LWS1 vs. LWS2 cone subtypes exhibit transcriptional differences beyond opsin expression.
Overall design Comparative gene expression profiling analysis of RNA-seq data for long wavelength-sensing cones and two subtypes. 3 replicates from FACS-sorted lws1 cone photoreceptor samples and 3 replicates of FACS-sorted lws2 cone photoreceptor samples. 3 replicates from FACS-sorted tdTomato+ cone photoreceptor samples and 3 replicates from FACS-sorted tdTomato- retinal cell samples.
Contributor(s) Sun C, Stenkamp D
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Submission date May 19, 2023
Last update date Jun 30, 2023
Contact name Chi Sun
Organization name Washington University in St. Louis
Department Ophthalmology and Visual Sciences
Lab McMillan Hospital 618
Street address 4523 Clayton Ave.
City St. Louis
State/province MO
ZIP/Postal code 63110
Country USA
Platforms (1)
GPL18413 Illumina HiSeq 2500 (Danio rerio)
Samples (12)
GSM7389983 lws1GFP+_adult_lwsPAC_H_rep1
GSM7389984 lws1GFP+_adult_lwsPAC_H_rep2
GSM7389985 lws1GFP+_adult_lwsPAC_H_rep3
BioProject PRJNA974400

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE232902_lws1lws2_DESeq2_matrix.tsv.gz 66.2 Kb (ftp)(http) TSV
GSE232902_lws1lws2_tdTmtdTd_raw_count_matrix.tsv.gz 322.0 Kb (ftp)(http) TSV
GSE232902_tdTmtdTp_DESeq2_matrix.tsv.gz 46.2 Kb (ftp)(http) TSV
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Raw data are available in SRA
Processed data are available on Series record

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