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| Status |
Public on Jun 30, 2023 |
| Title |
Transcriptomic analysis of long wavelength-sensing cones of zebrafish retina |
| Organism |
Danio rerio |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
The tandemly duplicated zebrafish lws opsin genes and the human LWS/MWS opsin genes are evolved from a common ancestral long wavelength-sensing opsin gene. This dataset shows that LWS1 vs. LWS2 cone subtypes exhibit transcriptional differences beyond opsin expression.
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| Overall design |
Comparative gene expression profiling analysis of RNA-seq data for long wavelength-sensing cones and two subtypes. 3 replicates from FACS-sorted lws1 cone photoreceptor samples and 3 replicates of FACS-sorted lws2 cone photoreceptor samples. 3 replicates from FACS-sorted tdTomato+ cone photoreceptor samples and 3 replicates from FACS-sorted tdTomato- retinal cell samples.
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| Contributor(s) |
Sun C, Stenkamp D |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
May 19, 2023 |
| Last update date |
Jun 30, 2023 |
| Contact name |
Chi Sun |
| E-mail(s) |
sunchi@wustl.edu
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| Organization name |
Washington University in St. Louis
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| Department |
Ophthalmology and Visual Sciences
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| Lab |
McMillan Hospital 618
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| Street address |
4523 Clayton Ave.
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| City |
St. Louis |
| State/province |
MO |
| ZIP/Postal code |
63110 |
| Country |
USA |
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| Platforms (1) |
| GPL18413 |
Illumina HiSeq 2500 (Danio rerio) |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA974400 |
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