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| Status |
Public on Jun 30, 2023 |
| Title |
ATF3- and ZIKV-dependent transcriptome of A549 cells |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We examined the transcriptome (polyA+ RNAseq) of parental or ATF3 knock-out A549 lung epithelial adenocarcinoma cell lines in response to either a mock infection or infection with ZIKV.
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| Overall design |
Comparative gene expression profiling (polyA+ selected RNAseq) on three biological replicates
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| Contributor(s) |
Sammons M, Pager C |
| Citation(s) |
39212382 |
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| Submission date |
May 21, 2023 |
| Last update date |
Dec 04, 2024 |
| Contact name |
Morgan A Sammons |
| E-mail(s) |
masammons@albany.edu
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| Organization name |
University at Albany - SUNY
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| Department |
Biological Sciences
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| Lab |
Sammons
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| Street address |
1400 Washington Ave, Life Sciences 2075
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| City |
Albany |
| State/province |
NY |
| ZIP/Postal code |
12222 |
| Country |
USA |
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| Platforms (1) |
| GPL21290 |
Illumina HiSeq 3000 (Homo sapiens) |
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| Samples (12)
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| GSM7400932 |
Wild-type A549 cells with mock virus infection, biological replicate 1 |
| GSM7400933 |
Wild-type A549 cells with mock virus infection, biological replicate 2 |
| GSM7400934 |
Wild-type A549 cells with mock virus infection, biological replicate 3 |
| GSM7400935 |
ATF3 knockout A549 cells with mock virus infection, biological replicate 1 |
| GSM7400936 |
ATF3 knockout A549 cells with mock virus infection, biological replicate 2 |
| GSM7400937 |
ATF3 knockout A549 cells with mock virus infection, biological replicate 3 |
| GSM7400938 |
Wild-type A549 cells with ZIKV virus infection, biological replicate 1 |
| GSM7400939 |
Wild-type A549 cells with ZIKV virus infection, biological replicate 2 |
| GSM7400940 |
Wild-type A549 cells with ZIKV virus infection, biological replicate 3 |
| GSM7400941 |
ATF3 knockout A549 cells with ZIKV virus infection, biological replicate 1 |
| GSM7400942 |
ATF3 knockout A549 cells with ZIKV virus infection, biological replicate 2 |
| GSM7400943 |
ATF3 knockout A549 cells with ZIKV virus infection, biological replicate 3 |
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| Relations |
| BioProject |
PRJNA974835 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE233049_RAW.tar |
32.7 Mb |
(http)(custom) |
TAR (of TSV) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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