|
| Status |
Public on Jun 30, 2023 |
| Title |
ATF3- and ZIKV-dependent transcriptome of A549 cells |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We examined the transcriptome (polyA+ RNAseq) of parental or ATF3 knock-out A549 lung epithelial adenocarcinoma cell lines in response to either a mock infection or infection with ZIKV.
|
| |
|
| Overall design |
Comparative gene expression profiling (polyA+ selected RNAseq) on three biological replicates
|
| |
|
| Contributor(s) |
Sammons M, Pager C |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
May 21, 2023 |
| Last update date |
Jun 30, 2023 |
| Contact name |
Morgan A Sammons |
| E-mail(s) |
masammons@albany.edu
|
| Organization name |
University at Albany - SUNY
|
| Department |
Biological Sciences
|
| Lab |
Sammons
|
| Street address |
1400 Washington Ave, Life Sciences 2075
|
| City |
Albany |
| State/province |
NY |
| ZIP/Postal code |
12222 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL21290 |
Illumina HiSeq 3000 (Homo sapiens) |
|
| Samples (12)
|
| GSM7400932 |
Wild-type A549 cells with mock virus infection, biological replicate 1 |
| GSM7400933 |
Wild-type A549 cells with mock virus infection, biological replicate 2 |
| GSM7400934 |
Wild-type A549 cells with mock virus infection, biological replicate 3 |
| GSM7400935 |
ATF3 knockout A549 cells with mock virus infection, biological replicate 1 |
| GSM7400936 |
ATF3 knockout A549 cells with mock virus infection, biological replicate 2 |
| GSM7400937 |
ATF3 knockout A549 cells with mock virus infection, biological replicate 3 |
| GSM7400938 |
Wild-type A549 cells with ZIKV virus infection, biological replicate 1 |
| GSM7400939 |
Wild-type A549 cells with ZIKV virus infection, biological replicate 2 |
| GSM7400940 |
Wild-type A549 cells with ZIKV virus infection, biological replicate 3 |
| GSM7400941 |
ATF3 knockout A549 cells with ZIKV virus infection, biological replicate 1 |
| GSM7400942 |
ATF3 knockout A549 cells with ZIKV virus infection, biological replicate 2 |
| GSM7400943 |
ATF3 knockout A549 cells with ZIKV virus infection, biological replicate 3 |
|
| Relations |
| BioProject |
PRJNA974835 |
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