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| Status |
Public on Jul 05, 2024 |
| Title |
Differential programs of melanocyte cell states |
| Organisms |
Danio rerio; Homo sapiens; Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
39163475 |
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| Submission date |
May 23, 2023 |
| Last update date |
Oct 10, 2024 |
| Contact name |
Vivek T Natarajan |
| E-mail(s) |
tnvivek@igib.in
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| Organization name |
CSIR-IGIB
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| Lab |
Pigment Cell Biology Lab
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| Street address |
Mathura Road
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| City |
Delhi |
| State/province |
Delhi |
| ZIP/Postal code |
110025 |
| Country |
India |
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| Platforms (3) |
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| Samples (20)
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| GSM7401914 |
D3, B16, scATACseq |
| GSM7401915 |
D5, B16, replicate 1, scRNAseq |
| GSM7401916 |
D5, B16, replicate 1, scATACseq |
| GSM7401917 |
D5, B16, replicate 2, scRNAseq |
| GSM7401918 |
D5, B16, replicate 2, scATACseq |
| GSM7401919 |
B16, LP, replicate 1, H3K27ac |
| GSM7401920 |
B16, HP, replicate 1, H3K27ac |
| GSM7401921 |
B16, Unsorted, replicate 1, IgG |
| GSM7401922 |
B16, LP, replicate 2, H3K27ac |
| GSM7401923 |
B16, HP, replicate 2, H3K27ac |
| GSM7401924 |
B16, Unsorted, replicate 2, IgG |
| GSM7401925 |
LP, B16, scRNAseq |
| GSM7401926 |
HP, B16, scRNAseq |
| GSM7401927 |
FD, NHEM, scRNAseq |
| GSM7401928 |
FA, NHEM, scRNAseq |
| GSM7706846 |
mitfa_low, zf, scRNAseq |
| GSM7706847 |
mitfa_high, zf, scRNAseq |
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| This SuperSeries is composed of the following SubSeries:
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| GSE233134 |
Gene expression and chromatin accessibility profile at single cell level of B16 cells [B16_D0_3_5_scMulti] |
| GSE233135 |
H3K27ac ChIP sequencing of low and high pigment B16 cells [B16_D5_LP_HP_ChIPSeq] |
| GSE233136 |
Gene expression profile at single cell level of low and high pigmented B16 cells [B16_D7_LP_HP_scRNA] |
| GSE233137 |
Gene expression profile at single cell level of cultured normal human epidermal melanocytes (NHEMs) [NHEM_FSK_scRNA] |
| GSE240655 |
Gene expression profile at single cell level of mitfa:GFP labelled zebrafish cells at 24hpf |
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| Relations |
| BioProject |
PRJNA975369 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE233198_RAW.tar |
4.4 Gb |
(http)(custom) |
TAR (of BED, BW, MTX, NARROWPEAK, TBI, TSV) |
SRA Run Selector |
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