NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE233199 Query DataSets for GSE233199
Status Public on Jun 09, 2023
Title Transcriptome analysis of different tissues in different materials
Organism Nicotiana tabacum
Experiment type Expression profiling by high throughput sequencing
Summary We used two hybrid combinations and their 4 parents as materials. One week after topping the tobacco plant, samples were taken, including three tissues: root, stalk, and leaf. The RNA of these samples was extracted, and transcriptome sequencing analysis was carried out to explore the transcriptional profile differences between hybrids and their parents, and to analyze the gene differential expression between different tissues.
 
Overall design Fifty-four samples were analyzed, including six plant materials,three plant tissues, each with three replicates.
 
Contributor(s) Pi K
Citation(s) 37344758
Submission date May 23, 2023
Last update date Sep 08, 2023
Contact name kai pi
E-mail(s) pekyhome@outlook.com
Organization name Guizhou University
Department Key Laboratory for Tobacco Quality Research Guizhou Province
Lab Tobacco College
Street address None
City Guiyang
State/province Guizhou
ZIP/Postal code 550000
Country China
 
Platforms (1)
GPL29390 Illumina NovaSeq 6000 (Nicotiana tabacum)
Samples (54)
GSM7412529 RNA-Seqoftobacco:Root [Hongda_Ra_1]
GSM7412530 RNA-Seqoftobacco:Root [H×B_Ra_1]
GSM7412531 RNA-Seqoftobacco:Root [Basma_Ra_1]
Relations
BioProject PRJNA975370

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE233199_Leaf_exp.txt.gz 1.8 Mb (ftp)(http) TXT
GSE233199_Root_exp.txt.gz 1.9 Mb (ftp)(http) TXT
GSE233199_Stalk_exp.txt.gz 1.8 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap