NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE233473 Query DataSets for GSE233473
Status Public on Jul 25, 2023
Title The sex-specific factor SOA establishes X chromosome dosage compensation in Anopheles mosquitos [SOAR-RNA-seq]
Organism Anopheles gambiae
Experiment type Expression profiling by high throughput sequencing
Summary The Anopheles mosquito is one of thousands of species in which sex differences play a central role in their biology, as only females need a blood meal in order to produce eggs. Sex differentiation is regulated by sex chromosomes, but their presence creates a dosage imbalance between males (XY) and females (XX). Dosage compensation (DC) can re-equilibrate the expression of sex-chromosomal genes, but because DC mechanisms have only been fully characterized in a few model organisms, key questions about its evolutionary diversity and functional necessity remain unresolved. Here we report the discovery of a previously uncharacterized gene (SOA) as a master regulator of DC in the malaria mosquito Anopheles gambiae. Sex-specific alternative splicing prevents functional SOA protein expression in females. The male isoform encodes a DNA-binding protein that binds the promoters of active X chromosomal genes. Expressing male SOA is sufficient to induce DC in female cells. Male mosquitoes lacking SOA or female mosquitos ectopically expressing the male isoform exhibit X chromosome misregulation, which is compatible with viability but causes developmental delay. Thus, our molecular analysis of the first DC master regulator in a non-model organism elucidates the evolutionary steps leading to the establishment of a chromosome-specific fine-tuning mechanism.
 
Overall design Comparative gene expression profiling analysis of RNA-seq data for female pupae of wild-type and SOA-R knock-in genotype
 
Contributor(s) Kalita AI, Marois E, Basilicata MF, Kozielska M, Weissing FJ, Jaouen E, Möckel M, Rühle F, Butter F, Keller Valsecchi CI
Citation(s) 37769784
Submission date May 25, 2023
Last update date Oct 24, 2023
Contact name Frank Rühle
E-mail(s) f.ruehle@imb-mainz.de
Organization name Institute of Molecular Biology (IMB)
Department Bioinformatics Core Facility
Street address Ackermannweg 4
City Mainz
ZIP/Postal code 55128
Country Germany
 
Platforms (1)
GPL22033 Illumina NextSeq 500 (Anopheles gambiae)
Samples (7)
GSM7429036 Female_WT_RNA-seq_Rep1
GSM7429037 Female_WT_RNA-seq_Rep2
GSM7429038 Female_WT_RNA-seq_Rep3
This SubSeries is part of SuperSeries:
GSE210630 SOA confers X chromosome dosage compensation in Anopheles gambiae mosquitoes
Relations
BioProject PRJNA976314

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE233473_RAW.tar 353.6 Mb (http)(custom) TAR (of BW)
GSE233473_counts_pupae_SOAR_RNA.tsv.gz 177.9 Kb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap