|
| Status |
Public on May 22, 2024 |
| Title |
Reanalysis of peripheral blood gene expression of IFIH1 rs1990760 variants in critically-ill COVID-19 patients [third-party re-analysis of GSE168400] |
| Sample organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Third-party reanalysis
|
| Summary |
Peripheral blood gene expression analysis of IFIH1 rs1990760 variants in critically-ill COVID-19 patients
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| |
|
| Overall design |
Re-analysis of GSE168400
data processing step:
Basecalling was performed using the default Ion Torrent software trimming was performed using the fastp software v0.20.1 and the parameters -f 3, -r, -M 15 Counts were calculated using the pseudoalignment tool salmon v1.4.0 with the default parameters for mapping-based quantification and the hg38 salmon partial index (genome build: hg38 (GRCh38)). Reads were loaded in R using the tximport library. the 42n_expr.txt includes log2 of TPM values
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| |
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| Contributor(s) |
Ghosh P |
| Citation(s) |
38723554 |
| |
| Submission date |
May 27, 2023 |
| Last update date |
May 22, 2024 |
| Contact name |
Pradipta Ghosh |
| E-mail(s) |
prghosh@ucsd.edu
|
| Organization name |
University of California San Diego
|
| Department |
Departments of Medicine and Cellular and Molecular Medicine
|
| Street address |
9500 Gilman Drive (MC 0651)
|
| City |
La Jolla, CA 92093 |
| State/province |
CA |
| ZIP/Postal code |
92093 |
| Country |
USA |
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| Relations |
| Reanalysis of |
GSM5137947 |
| Reanalysis of |
GSM5137948 |
| Reanalysis of |
GSM5137949 |
| Reanalysis of |
GSM5137950 |
| Reanalysis of |
GSM5137951 |
| Reanalysis of |
GSM5137952 |
| Reanalysis of |
GSM5137953 |
| Reanalysis of |
GSM5137954 |
| Reanalysis of |
GSM5137955 |
| Reanalysis of |
GSM5137956 |
| Reanalysis of |
GSM5137957 |
| Reanalysis of |
GSM5137958 |
| Reanalysis of |
GSM5137959 |
| Reanalysis of |
GSM5137960 |
| Reanalysis of |
GSM5137961 |
| Reanalysis of |
GSM5137962 |
| Reanalysis of |
GSM5137963 |
| Reanalysis of |
GSM5137964 |
| Reanalysis of |
GSM5137965 |
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GSM5137966 |
| Reanalysis of |
GSM5137967 |
| Reanalysis of |
GSM5137968 |
| Reanalysis of |
GSM5137969 |
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GSM5137970 |
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GSM5137971 |
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GSM5137972 |
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| Reanalysis of |
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| Reanalysis of |
GSM5137976 |
| Reanalysis of |
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| Reanalysis of |
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| Reanalysis of |
GSM5137984 |
| Reanalysis of |
GSM5137985 |
| Reanalysis of |
GSM5137986 |
| Reanalysis of |
GSM5137987 |
| Reanalysis of |
GSM5137988 |
