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| Status |
Public on Jul 14, 2023 |
| Title |
Effect of NleE effector on gene expression in HCT116 cells |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To investigate the function of NleE in the regulation of host transcription, we established HCT116 cell lines stably expressing NleE. We performed toal RNA-seq and compared transcription of HCT116 cells with and without NleE expression.
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| Overall design |
Comparative gene expression profiling analysis of RNA-seq data for HCT 116 cells expressing NleE and HCT 116 cells with empty vector.
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| Contributor(s) |
Ren H, Ouyang X, Zhou L |
| Citation(s) |
37379216 |
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| Submission date |
May 30, 2023 |
| Last update date |
Jul 14, 2023 |
| Contact name |
haiyan ren |
| E-mail(s) |
hyren@scu.edu.cn
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| Phone |
+8617828458804
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| Organization name |
sichuan univerisity
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| Street address |
ren min nan lu san duan 17 hao
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| City |
Chengdu |
| ZIP/Postal code |
610041 |
| Country |
China |
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| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA977601 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE233687_Expression.txt.gz |
4.1 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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