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| Status |
Public on Mar 10, 2024 |
| Title |
SPA regulation of light induced gene expressions in dark-grown Arabidopsis thaliana |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
The total mRNA and polysomal RNA expression profiles of wild type (Col-0) and the quadruple spa mutant (spaQ) were analyzed under dark or in 4 hour light treated condition. The gene expression changed in spaQ mutant was analyzed and compared with Col-0.
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| Overall design |
We have total of 24 samples. Twelve of them are 4 days dark-grown seedlings, Col-0 and spaQ mutant, to do the total RNA extraction and polysomal RNA extraction, each has three replicates. And the rest of them are the 4 days dark-grown seedlings treated with 4 h light treatment, Col-0 and spaQ mutant, to do the total RNA extraction and polysomal RNA extraction, each has three replicates.
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| Contributor(s) |
Huang L, Cheng M |
| Citation(s) |
38658612 |
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| Submission date |
May 30, 2023 |
| Last update date |
May 17, 2024 |
| Contact name |
Mei-Chun Cheng |
| E-mail(s) |
ninadscheng@ntu.edu.tw
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| Organization name |
National Taiwan University
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| Street address |
No. 1, Roosevelt Rd
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| City |
Taipei |
| ZIP/Postal code |
10617 |
| Country |
Taiwan |
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| Platforms (1) |
| GPL17639 |
Illumina HiSeq 2500 (Arabidopsis thaliana) |
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| Samples (24)
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| GSM7434386 |
Col-0, dark,polysomal RNA, rep1 |
| GSM7434387 |
Col-0, dark,polysomal RNA, rep2 |
| GSM7434388 |
Col-0, dark,polysomal RNA, rep3 |
| GSM7434389 |
Col-0, light, total RNA, rep1 |
| GSM7434390 |
Col-0, light, total RNA, rep2 |
| GSM7434391 |
Col-0, light, total RNA, rep3 |
| GSM7434392 |
Col-0, light, polysomal RNA, rep1 |
| GSM7434393 |
Col-0, light, polysomal RNA, rep2 |
| GSM7434394 |
Col-0, light, polysomal RNA, rep3 |
| GSM7434395 |
spaQ, dark, total RNA, rep1 |
| GSM7434396 |
spaQ, dark, total RNA, rep2 |
| GSM7434397 |
spaQ, dark, total RNA, rep3 |
| GSM7434398 |
spaQ, dark,polysomal RNA, rep1 |
| GSM7434399 |
spaQ, dark,polysomal RNA, rep2 |
| GSM7434400 |
spaQ, dark,polysomal RNA, rep3 |
| GSM7434401 |
spaQ, light, total RNA, rep1 |
| GSM7434402 |
spaQ, light, total RNA, rep2 |
| GSM7434403 |
spaQ, light, total RNA, rep3 |
| GSM7434404 |
spaQ, light, polysomal RNA, rep1 |
| GSM7434405 |
spaQ, light, polysomal RNA, rep2 |
| GSM7434406 |
spaQ, light, polysomal RNA, rep3 |
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| Relations |
| BioProject |
PRJNA977810 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE233765_RAW.tar |
15.1 Mb |
(http)(custom) |
TAR (of XLSX) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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