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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 20, 2024 |
| Title |
Basis of gene-specific transcription regulation by the Inegrator Complex |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Jun 01, 2023 |
| Last update date |
Jun 20, 2024 |
| Contact name |
Stefanie Jonas |
| E-mail(s) |
stefanie.jonas@mol.biol.ethz.ch
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| Organization name |
ETH Zurich
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| Department |
Biology
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| Street address |
Otto-Stern-Weg 5
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| City |
Zürich |
| State/province |
Zürich |
| ZIP/Postal code |
8093 |
| Country |
Switzerland |
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| Platforms (2) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
| GPL34284 |
Illumina NovaSeq X Plus (Homo sapiens) |
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| Samples (63)
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| GSM7439781 |
HEK293T cells, Input Repllicate 2 |
| GSM7439782 |
HEK293T cells, INTS11 Repllicate 1 |
| GSM7439783 |
HEK293T cells, INTS11 Repllicate 2 |
| GSM7439784 |
HEK293T cells, INTS13 Repllicate 1 |
| GSM7439785 |
HEK293T cells, INTS13 Repllicate 2 |
| GSM7439786 |
HEK293T cells, ZEB1 Repllicate 1 |
| GSM7439787 |
HEK293T cells, ZEB1 Repllicate 2 |
| GSM7439788 |
HEK293T cells, ZNF609 Repllicate 1 |
| GSM7439789 |
HEK293T cells, ZNF609 Repllicate 2 |
| GSM7439790 |
HEK293T cells, control siPOOL repllicate 1a |
| GSM7439791 |
HEK293T cells, control siPOOL repllicate 1b |
| GSM7439792 |
HEK293T cells, control siPOOL repllicate 2 |
| GSM7439793 |
HEK293T cells, TSPYL2 siPOOL, replicate 1 |
| GSM7439794 |
HEK293T cells, TSPYL2 siPOOL, replicate 2 |
| GSM7439795 |
HEK293T cells, ZEB1 siPOOL, replicate 1 |
| GSM7439796 |
HEK293T cells, ZEB1 siPOOL, replicate 2 |
| GSM7439797 |
HEK293T cells, ZNF608 siPOOL, replicate 1 |
| GSM7439798 |
HEK293T cells, ZNF608 siPOOL, replicate 2 |
| GSM7439799 |
HEK293T cells, ZNF609 siPOOL, replicate 1 |
| GSM7439800 |
HEK293T cells, ZNF609 siPOOL, replicate 2 |
| GSM7439801 |
HEK293T cells, ZNF687 siPOOL, replicate 1 |
| GSM7439802 |
HEK293T cells, ZNF687 siPOOL, replicate 2 |
| GSM7439803 |
HEK293T cells, HDGF siPOOL, replicate 3 |
| GSM7439804 |
HEK293T cells, HDGF siPOOL, replicate 4 |
| GSM7439805 |
HEK293T cells, HDGF siPOOL, 24h glucose starvation, replicate 3 |
| GSM7439806 |
HEK293T cells, HDGF siPOOL, 24h glucose starvation, replicate 4 |
| GSM7439807 |
HEK293T cells, INTS13 siPOOL, replicate 3 |
| GSM7439808 |
HEK293T cells, INTS13 siPOOL, replicate 4 |
| GSM7439809 |
HEK293T cells, INTS13 siPOOL, 24h glucose starvation, replicate 3 |
| GSM7439810 |
HEK293T cells, INTS13 siPOOL, 24h glucose starvation, replicate 4 |
| GSM7439811 |
HEK293T cells, control siPOOL repllicate 3a |
| GSM7439812 |
HEK293T cells, control siPOOL repllicate 3b |
| GSM7439813 |
HEK293T cells, control siPOOL repllicate 4a |
| GSM7439814 |
HEK293T cells, control siPOOL repllicate 4b |
| GSM7439815 |
HEK293T cells, control siPOOL, 24h glucose starvation, repllicate 3a |
| GSM7439816 |
HEK293T cells, control siPOOL, 24h glucose starvation, repllicate 3b |
| GSM7439817 |
HEK293T cells, control siPOOL, 24h glucose starvation, repllicate 4a |
| GSM7439818 |
HEK293T cells, control siPOOL, 24h glucose starvation, repllicate 4b |
| GSM7439819 |
HEK293T cells, control siPOOL (for ZMYND8 depletion) repllicate 3 |
| GSM7439820 |
HEK293T cells, control siPOOL (for ZMYND8 depletion) repllicate 4 |
| GSM7439821 |
HEK293T cells, ZMYND8 siPOOL repllicate 3 |
| GSM7439822 |
HEK293T cells, ZMYND8 siPOOL repllicate 4 |
| GSM7439825 |
HEK293T cells, ZNF655 siPOOL repllicate 3 |
| GSM7439826 |
HEK293T cells, ZNF655 siPOOL repllicate 4 |
| GSM8118802 |
HDGF ChIP, 24h starvation, HEK293T, Rep1 |
| GSM8118803 |
HDGF ChIP, 24h starvation, HEK293T, Rep2 |
| GSM8118804 |
INTS13 ChIP, 24h starvation, HEK293T, Rep1 |
| GSM8118805 |
INTS13 ChIP, 24h starvation, HEK293T, Rep2 |
| GSM8118806 |
ChIP input, 24h starvation, HEK293T, Rep1 |
| GSM8118807 |
ChIP input, 24h starvation, HEK293T, Rep2 |
| GSM8118808 |
INTS13 ChIP, HDGF depletion, HEK293T, Rep1 |
| GSM8118809 |
INTS13 ChIP, HDGF depletion, HEK293T, Rep2 |
| GSM8118810 |
ChIP input, HDGF depletion, HEK293T, Rep1 |
| GSM8118811 |
ChIP input, HDGF depletion, HEK293T, Rep2 |
| GSM8118812 |
HDGF ChIP, ctrl depletion, HEK293T, Rep1 |
| GSM8118813 |
HDGF ChIP, ctrl depletion, HEK293T, Rep2 |
| GSM8118814 |
INTS13 ChIP, ctrl depletion, HEK293T, Rep1 |
| GSM8118815 |
INTS13 ChIP, ctrl depletion, HEK293T, Rep2 |
| GSM8118816 |
ChIP input, control depletion, HEK293T, Rep1 |
| GSM8118817 |
ChIP input, control depletion, HEK293T, Rep2 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE233956 |
Basis of gene-specific transcription regulation by the Inegrator Complex (ChIP-Seq I) |
| GSE233957 |
Basis of gene-specific transcription regulation by the Inegrator Complex (RNA-Seq) |
| GSE260520 |
Basis of gene-specific transcription regulation by the Inegrator Complex (ChIP-Seq II) |
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| Relations |
| BioProject |
PRJNA978641 |
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