|
| Status |
Public on Jun 07, 2023 |
| Title |
Transcriptional Profile of ZIKV Infection in HTR8 cells and U251 cells |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
To identify the various host factors involved in ZIKV infection, we compared the transcriptional profile for ZIKV-infected human first-trimester placenta trophoblast cell (HTR8) and glioblastoma astrocytoma (U251-MG). Our results demonstrated that the common IFN, inflammatory cytokine, and chemokine production were activated upon ZIKV infection of these two cell types while serval DEGs were enriched in distinct biological processes related to the characteristics of cell types. Our findings identified multiple host factors associated with ZIKV pathogenesis and potential treatment of congenital zika syndrome (CZS)
|
| |
|
| Overall design |
We identified the differentially expressed genes through transcriptome analyses between mock-infected and ZIKV-infected HTR8 cells and U251 cells, the ZIKV-infected group and the mock-infected group had three samples.
|
| |
|
| Contributor(s) |
Chen Q, Li N, Zeng S |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| BioProject |
PRJNA883202 |
| Submission date |
Jun 05, 2023 |
| Last update date |
Jun 07, 2023 |
| Contact name |
Qiqi Chen |
| E-mail(s) |
chenqq53@mail2.sysu.edu.cn
|
| Phone |
15591822232
|
| Organization name |
Sun Yat-sen University
|
| Department |
School of Public Health (Shenzhen)
|
| Street address |
Guangming District, Shenzhen City, Guangdong Province
|
| City |
Shenzhen |
| State/province |
Guangdong Province |
| ZIP/Postal code |
518107 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
| Samples (12)
|
|
Less...
More...