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| Status |
Public on Jan 01, 2024 |
| Title |
Double-stranded RNA triggers a distinct integrated stress response in the early embryo [dsRNA tp53] |
| Organism |
Danio rerio |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Gene functional study and the emerging mRNA therapy technology heavily rely on in vitro transcribed (IVT) mRNA, but the double-stranded RNA (dsRNA) by-product generated during IVT is often recognized by cells as a marker of virus replication, leading to the integrated stress response (ISR).The biological effects of dsRNA in undifferentiated cells differ significantly from those of differentiated counterparts.Here, we found that dsRNA triggered an unprecedented ISR in zebrafish early embryos, leading to developmental delay, severe cell necrosis, and lethal malformations.Mechanistically, dsRNA stimulation caused a PKR-eIF2α independent global translation inhibition and a burst of p53 signaling. In turn, p53 activated Interferon Stimulated Genes (ISGs) and other defense-related genes in the absence of the IFN system. Unexpectedly, p53 does not promote cell death; instead, it plays a protective role in weakening the damage of translation repression by compromising protein turnover via enhanced ISGylation.This study thus unveils a distinct ISR upon dsRNA stimulation, which may help perform faithful gene overexpression in early embryos and shed light on the strategies of undifferentiated cells against RNA virus infection.
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| Overall design |
To investigate the impact of the dsRNA-induced stress response, we compared the transcriptomes between uninjected and dsRNA-injected zebrafish MZtp53 embryos at 6 hpf
Comparative gene expression profiling analysis of RNA-seq data for MZtp53 uninjected embryos and its injected dsRNA embryos
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| Contributor(s) |
Lu T, Shao M |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Jun 06, 2023 |
| Last update date |
Jan 01, 2024 |
| Contact name |
tong lu |
| E-mail(s) |
202020327@mail.sdu.edu.cn
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| Organization name |
ShanDong University
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| Street address |
72, binghai rd
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| City |
Qingdao |
| ZIP/Postal code |
266207 |
| Country |
China |
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| Platforms (1) |
| GPL14875 |
Illumina HiSeq 2000 (Danio rerio) |
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| Samples (12)
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| This SubSeries is part of SuperSeries: |
| GSE234230 |
Double-stranded RNA triggers a distinct integrated stress response in the early embryo |
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| Relations |
| BioProject |
PRJNA980587 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE234229_MZtp53-VS-MZtp53_dsRNA_differential_expression_all_genes.txt.gz |
4.6 Mb |
(ftp)(http) |
TXT |
| GSE234229_MZtp53-VS-MZtp53_dsRNA_differential_expression_genes.txt.gz |
280.8 Kb |
(ftp)(http) |
TXT |
| GSE234229_WT-VS-WT_dsRNA_differential_expression_all_genes.txt.gz |
4.6 Mb |
(ftp)(http) |
TXT |
| GSE234229_WT-VS-WT_dsRNA_significantly_differential_expressed_genes.txt.gz |
278.7 Kb |
(ftp)(http) |
TXT |
| GSE234229_WT-VS_tp53_differential_expression_all_genes.txt.gz |
4.6 Mb |
(ftp)(http) |
TXT |
| GSE234229_WT-VS_tp53_significantly_differential_expressed_genes.txt.gz |
763.5 Kb |
(ftp)(http) |
TXT |
| GSE234229_WT_dsRNA-VS-MZtp53_dsRNA_differential_expression_all_genes.txt.gz |
4.6 Mb |
(ftp)(http) |
TXT |
| GSE234229_WT_dsRNA-VS-MZtp53_dsRNA_differential_expression_genes.txt.gz |
795.3 Kb |
(ftp)(http) |
TXT |
| GSE234229_all_genes_expression.fpkm_anno.txt.gz |
4.4 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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