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Series GSE234601 Query DataSets for GSE234601
Status Public on Sep 20, 2023
Title Stepwise emergence of the neuronal gene expression program in early animal evolution
Organisms Trichoplax adhaerens; Trichoplax sp. H2; Hoilungia hongkongensis; Hoilungia sp. H23
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary We performed single-cell transcriptome analysis (using 10x) of four placozoan species (Trichoplax adhaerens, Trichoplax sp. H2, Cladtertia collaboinventa, Hoilungia hongkongensis). Additionally we performed bulk ATAC-seq experiments and anti-H3K4me2/anti-H3K4me3 ChIP-seq experiments the same species.
Overall design Adult specimens were fixed, dissociated and pooled before sorting single-cells for scRNAseq. Some samples were mixed (cross-species or cross-treatments) and processed together. Instructions for demultiplexing cells are provided.
Please note that the processed data for the scRNA-seq samples are generated from multiple samples (as indicated in the corresponding sample descriptionfield) and thus is linked to the Series records.
Web link
Contributor(s) Sebe-Pedros A, Najle SR, Grau-Bove X
Citation(s) 37729907
Submission date Jun 09, 2023
Last update date Oct 31, 2023
Contact name Arnau Sebe-Pedros
Organization name Centre for Genomic Regulation
Department Systems Biology
Lab Sebe-Pedros lab
Street address Dr. Aiguader 88
City Barcelona
ZIP/Postal code 08003
Country Spain
Platforms (7)
GPL24656 Illumina NextSeq 500 (Trichoplax adhaerens)
GPL33475 Illumina NextSeq 500 (Hoilungia hongkongensis)
GPL33476 Illumina NextSeq 500 (Trichoplax sp. H2)
Samples (34)
GSM7471614 Trichoplax adhaerens scRNA-seq 1
GSM7471615 Hoilungia hongkongensis scRNA-seq 1
GSM7471616 Hoilungia hongkongensis scRNA-seq 2
BioProject PRJNA982113

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE234601_Hhon.umimatrix.cell_annotations.tsv.gz 130.3 Kb (ftp)(http) TSV
GSE234601_Hhon.umimatrix.genes.tsv.gz 39.2 Kb (ftp)(http) TSV
GSE234601_Hhon.umimatrix.mtx.gz 35.3 Mb (ftp)(http) MTX
GSE234601_HoiH23.umimatrix.cell_annotations.tsv.gz 122.9 Kb (ftp)(http) TSV
GSE234601_HoiH23.umimatrix.genes.tsv.gz 42.6 Kb (ftp)(http) TSV
GSE234601_HoiH23.umimatrix.mtx.gz 48.3 Mb (ftp)(http) MTX
GSE234601_RAW.tar 208.8 Mb (http)(custom) TAR (of BW)
GSE234601_Readme_ClickTag_demultiplexing.xlsx 20.6 Kb (ftp)(http) XLSX
GSE234601_Tadh.umimatrix.cell_annotations.tsv.gz 95.2 Kb (ftp)(http) TSV
GSE234601_Tadh.umimatrix.genes.tsv.gz 44.9 Kb (ftp)(http) TSV
GSE234601_Tadh.umimatrix.mtx.gz 26.0 Mb (ftp)(http) MTX
GSE234601_TrH2.umimatrix.cell_annotations.tsv.gz 111.0 Kb (ftp)(http) TSV
GSE234601_TrH2.umimatrix.genes.tsv.gz 38.0 Kb (ftp)(http) TSV
GSE234601_TrH2.umimatrix.mtx.gz 28.2 Mb (ftp)(http) MTX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
Processed data provided as supplementary file

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