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Series GSE235516 Query DataSets for GSE235516
Status Public on Apr 22, 2024
Title ZDHHC20-Mediated S-Palmitoylation of YTHDF3 Stabilizes MYC mRNA to Promote Pancreatic Cancer Progression
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Post-translational modifications of malignant transformation and tumor maintenance in pancreatic ductal adenocarcinoma (PDAC) in the context of KRAS signaling remains largely unexplored. Here, we used the KPC mouse model to examine the effect of palmitoylation on pancreatic cancer progression. ZDHHC20, upregulated by KRAS, is abnormally overexpressed and associated with poor prognosis in patients with pancreatic cancer. Dysregulation of ZDHHC20 promotes pancreatic cancer progression in a palmitoylation-dependent manner. ZDHHC20 inhibits lysosomal localization and degradation of YTHDF3 through S-palmitoylation of Cys474, which can result in abnormal accumulation of the oncogenic product MYC and thereby promote the malignant phenotypes of cancer cells. Further, we designed a biologically active YTHDF3-derived peptide to competitively inhibit YTHDF3 palmitoylation mediated by ZDHHC20, which in turn downregulated MYC expression and inhibited the progression of KRAS mutant pancreatic cancer. Thus, these findings highlight the therapeutic potential of targeting the ZDHHC20-YTHDF3-MYC signaling axis in pancreatic cancer.
 
Overall design Comparative gene expression profiling analysis of RNA-seq data for the PANC-1 cells after kncokdown of ZDHHC20.
 
Contributor(s) Jin X, Liang H, Zhang H
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Submission date Jun 21, 2023
Last update date Apr 22, 2024
Contact name Huaiyuan Liang
E-mail(s) 228211116@csu.edu.cn
Organization name Institute of Urological Cancer, Central South University
Street address 183 Renmin Middle Road
City Changsha
ZIP/Postal code 410000
Country China
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (6)
GSM7504486 shControl_1
GSM7504487 shControl_2
GSM7504488 shControl_3
Relations
BioProject PRJNA986177

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Supplementary file Size Download File type/resource
GSE235516_shZDHHC20_gene_fpkm_expression.txt.gz 640.5 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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