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Series GSE235589 Query DataSets for GSE235589
Status Public on Jun 01, 2024
Title Structure of an aberrant spliceosome intermediate on its way to disassembly
Organism Schizosaccharomyces pombe
Experiment type Expression profiling by high throughput sequencing
Summary Intron removal during pre-mRNA splicing is of extraordinary complexity and its disruption causes a vast number of genetic diseases in humans. While key steps of the canonical spliceosome cycle have been revealed by combined structure-function analyses, structural information on an aberrant spliceosome committed to discard is not available. Here, we report the cryo-EM structure of a B state spliceosome intermediate primed for disassembly. We identify the DEAH-box helicase – G patch protein pair (Gih35-Gpl1) to maintain catalytic dormancy with Gpl1 recognizing a remodeled active site of the spliceosome due to a single-nucleotide insertion at the 3’ end of the 5’ exon. Remodeling is communicated to the spliceosome surface and the Ntr1 complex is recruited. Our data pave the way for a targeted analysis of spliceosome-associated quality control.
 
Overall design Detailed analysis of Ctr1-deficient and WT strains using high throughput poly(A)+ RNA sequencing.
 
Contributor(s) Horvath A, Fischer T, Soni K
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Submission date Jun 22, 2023
Last update date Jun 01, 2024
Contact name Attila Horvath
E-mail(s) attila.horvath@anu.edu.au
Organization name The Australian National University
Street address Garran Road 131
City Canberra
State/province ACT
ZIP/Postal code 2601
Country Australia
 
Platforms (1)
GPL28961 Illumina NovaSeq 6000 (Schizosaccharomyces pombe)
Samples (3)
GSM7505971 Wild Type polyA Rep1
GSM7505972 ctr1d polyA Rep1
GSM7505973 ctr1d polyA Rep2
Relations
BioProject PRJNA986513

Download family Format
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Supplementary file Size Download File type/resource
GSE235589_RAW.tar 150.1 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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