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Series GSE235703 Query DataSets for GSE235703
Status Public on Jun 30, 2024
Title MDA-MB-231 small spheroids and capsules.
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary MDA-MB-231 triple-negative breast cancer cells were each grown into aggregates using two fabrication approaches, (1) liquid overlay with a low (8,000 cell) seeding density, and (2) via microencapsulation with subsequent microcapsule processing. Upon sample maturation, RNA from these samples was extracted and sequenced to help identify differences in model gene expression.
 
Overall design RNA-Seq
 
Contributor(s) Roberge C, Bossardi Ramos R, Margarida B, James C
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jun 23, 2023
Last update date Jun 30, 2024
Contact name Ramon Bossardi Ramos
E-mail(s) bossarr@amc.edu
Organization name Albany Medical College
Department Department of Molecular and Cellular Physiology
Lab Adam's Lab
Street address 43 New Scotland Avenue
City Albany
State/province Ny
ZIP/Postal code 12208
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (9)
GSM7508113 MDA-MB231 cells, liquid overlay spheroid small 1
GSM7508114 MDA-MB231 cells, liquid overlay spheroid small 2
GSM7508115 MDA-MB231 cells, liquid overlay spheroid small 3
Relations
BioProject PRJNA986929

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE235703_MDA_counts_per_sample.csv.gz 665.5 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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