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Status |
Public on Jun 30, 2024 |
Title |
MDA-MB-231 small spheroids and capsules. |
Organism |
Homo sapiens |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
MDA-MB-231 triple-negative breast cancer cells were each grown into aggregates using two fabrication approaches, (1) liquid overlay with a low (8,000 cell) seeding density, and (2) via microencapsulation with subsequent microcapsule processing. Upon sample maturation, RNA from these samples was extracted and sequenced to help identify differences in model gene expression.
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Overall design |
RNA-Seq
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Contributor(s) |
Roberge C, Bossardi Ramos R, Margarida B, James C |
Citation missing |
Has this study been published? Please login to update or notify GEO. |
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Submission date |
Jun 23, 2023 |
Last update date |
Jun 30, 2024 |
Contact name |
Ramon Bossardi Ramos |
E-mail(s) |
bossarr@amc.edu
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Organization name |
Albany Medical College
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Department |
Department of Molecular and Cellular Physiology
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Lab |
Adam's Lab
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Street address |
43 New Scotland Avenue
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City |
Albany |
State/province |
Ny |
ZIP/Postal code |
12208 |
Country |
USA |
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Platforms (1) |
GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
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Samples (9)
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GSM7508113 |
MDA-MB231 cells, liquid overlay spheroid small 1 |
GSM7508114 |
MDA-MB231 cells, liquid overlay spheroid small 2 |
GSM7508115 |
MDA-MB231 cells, liquid overlay spheroid small 3 |
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Relations |
BioProject |
PRJNA986929 |
Supplementary file |
Size |
Download |
File type/resource |
GSE235703_MDA_counts_per_sample.csv.gz |
665.5 Kb |
(ftp)(http) |
CSV |
SRA Run Selector |
Raw data are available in SRA |
Processed data are available on Series record |
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