|
| Status |
Public on Jul 31, 2014 |
| Title |
Cyanide response in Escherichia coli |
| Organism |
Escherichia coli |
| Experiment type |
Expression profiling by array
|
| Summary |
The goal was to ascertain the impact of cyanide treatment on E. coli's transcriptome.
|
| |
|
| Overall design |
There were 4 biological samples. For each sample there were two replicate DNA microarray performed. Data was analyzed with Imagene and lcDNA Hyduke DR, Rohlin L, Kao KC, Liao JC. 2003 A software package for cDNA microarray data normalization and assessing confidence intervals. OMICS 7(3):227-234.
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| |
|
| Contributor(s) |
Hyduke DR, Jarboe LR |
| Citation |
AiLing Teh, Donovan Layton, Daniel R. Hyduke, Laura R. Jarboe, and Derrick K. Rollins, Sr. Data Mining Based on Principal Component Analysis: Application to the Nitric Oxide Response in Escherichia coli. Journal of Statistical Science and Application 2 (2014) 1-18
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| |
| Submission date |
Aug 11, 2010 |
| Last update date |
Sep 11, 2014 |
| Contact name |
Daniel R Hyduke |
| E-mail(s) |
danielhyduke@gmail.com
|
| Organization name |
Utah State University
|
| Department |
Biological Engineering
|
| Street address |
4105 Old Main Hill ENGR 402S
|
| City |
Logan |
| State/province |
UT |
| ZIP/Postal code |
84322-4105 |
| Country |
USA |
| |
|
| Platforms (1) |
|
| Samples (8)
|
| GSM578400 |
Ecoli_WT_100uM_KCN_Sample1_TechRep1 |
| GSM578401 |
Ecoli_WT_100uM_KCN_Sample1_TechRep2 |
| GSM578402 |
Ecoli_WT_100uM_KCN_Sample2_TechRep1 |
| GSM578403 |
Ecoli_WT_100uM_KCN_Sample2_TechRep2 |
| GSM578404 |
Ecoli_WT_100uM_KCN_Sample4_TechRep1 |
| GSM578405 |
Ecoli_WT_100uM_KCN_Sample4_TechRep2 |
| GSM578406 |
Ecoli_WT_100uM_KCN_Sample3_TechRep1 |
| GSM578407 |
Ecoli_WT_100uM_KCN_Sample3_TechRep2 |
|
| Relations |
| BioProject |
PRJNA130923 |
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