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Series GSE235844 Query DataSets for GSE235844
Status Public on Jun 29, 2023
Title Leveraging RNA-seq of bread wheat transcriptome to reveal diversity of RSA-related transcripts and their expression in contrasting environments
Organism Triticum aestivum
Experiment type Expression profiling by high throughput sequencing
Summary Root traits are significant targets for breeding stress-resilient and high-yielding wheat genotypes under climatic fluctuations. However, root transcriptome analysis is usually obscured due to challenges in root research. We performed transcriptome analysis of thirty bread wheat cultivars using RNA-seq to investigate the diversity and expression of root system architecture (RSA) related transcripts. We examined the expression patterns of these transcripts in both root and leaf tissues and found that various transcripts are root-specific which could be manipulated for desirable root traits.The presented RNA-seq datasets provide valueable source for identification of genes involved in various biological processes under varying climatic conditions.
 
Overall design Thirty spring wheat cultivars with three biological replicates under optimum growth conditions
 
Contributor(s) Rasheed A, Maqbool S
Citation(s) 38065977
BioProject PRJNA863398
Submission date Jun 26, 2023
Last update date Dec 22, 2023
Contact name Saman Maqbool
Organization name Quaid-i-Azam University, Islamabad
Department Plant Sciences
Lab Plant Biology Lab
Street address Shahdra Road
City Islamabad
ZIP/Postal code 45320
Country Pakistan
 
Platforms (1)
GPL26077 BGISEQ-500 (Triticum aestivum)
Samples (58)
GSM7510636 RNA-Seq of Barani roots
GSM7510637 RNA-Seq of C-217 roots
GSM7510638 RNA-Seq of C-271 roots

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE235844_RAW.tar 178.5 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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