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Series GSE235878 Query DataSets for GSE235878
Status Public on Jun 30, 2024
Title Uniparental disomy: expanding the clinical and molecular phenotypes of whole chromosomes
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
Summary Uniparental disomy (UPD) refers to as both homologous chromosomes inherited from only one parent without identical copies from the other parent. Current knowledge of the phenotypes is associated with imprinting disorders or autosomal recessive mutations. Recent studies had reported that UPD for chromosomes 6, 7, 11, 14, 15, and 20 accompanied with definite imprinted disorders. However, the phenotypes and outcomes of UPD with other chromosomes have not been completely identified. Herein, we combined three remarkable UPD patients involving different chromosomes and presented their phenotypes. The chromosomal microarray (CMA) demonstrated a whole homozygous region on chromosome 2 in patient A, on chromosome 9 in patient B, accompanied by a gain mosaic region (ratio:22%) of 19.18Mb in 9p22.2p13.2, and a LOH region on 14q23.2q32.12 and several genes with compound heterozygous mutation were detected in patient C
 
Overall design Chromosomal microarray analysis (CMA) were performed using amniotic fluids in prenatal
 
Contributor(s) Chen Q, Xu W
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Submission date Jun 27, 2023
Last update date Jul 01, 2024
Contact name Qi Chen
E-mail(s) xwl0806@yeah.net
Phone +8618252586936
Organization name Fourth affiliated hospital of Jiangsu University
Street address 20 ZHENDONG ROAD
City Zhenjiang
ZIP/Postal code 212001
Country China
 
Platforms (1)
GPL18637 [CytoScan750K_Array] Affymetrix CytoScan 750K Array
Samples (3)
GSM7511291 UPD sample 1 [patient B; CMA2021016]
GSM7511292 UPD sample 2 [patient A; CMA2022324]
GSM7511293 UPD sample 3 [patient C; CMA2022216]
Relations
BioProject PRJNA987960

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE235878_RAW.tar 237.7 Mb (http)(custom) TAR (of CEL, CYCHP)
Processed data provided as supplementary file

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