NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE237663 Query DataSets for GSE237663
Status Public on Sep 30, 2023
Title cohesin spreads bi-directionally to form chromatin jets in C. elegans
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Other
Summary Inspection of Hi-C and ChIP-seq data suggests that cohesin spreads from putative loading sites form chromatin jets
 
Overall design ChIP-seq and Hi-C data in auxin treated control, SMC-3 and WAPL-1 depletion conditions. All experiments were performed in two or more biological replicates. L2/L3 stage worms were used.
 
Contributor(s) Kim J, Ercan S
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jul 18, 2023
Last update date Jan 06, 2025
Contact name Jun Kim
E-mail(s) kimj50@nyu.edu
Phone 7183094777
Organization name NYU
Department Biology
Lab Ercan
Street address 100 Washington Square East 1009 Silver Center
City New York
State/province NY
ZIP/Postal code 10003
Country USA
 
Platforms (2)
GPL19757 Illumina NextSeq 500 (Caenorhabditis elegans)
GPL26672 Illumina NovaSeq 6000 (Caenorhabditis elegans)
Samples (83)
GSM7635372 HiC_JK05_1hrauxin_L3_rep1 [JK153]
GSM7635373 HiC_JK05_1hrauxin_L3_rep2 [JK180]
GSM7635374 HiC_JK06_1hrauxin_L3_rep1a [JK155a]
Relations
BioProject PRJNA996120

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE237663_DEseq2FC_4hrauxin_smc3depl_over_CA1200.tab.gz 1004.9 Kb (ftp)(http) TAB
GSE237663_DEseq2FC_4hrauxin_wapldepl_over_CA1200.tab.gz 1000.5 Kb (ftp)(http) TAB
GSE237663_H4K20me1_HW04_1hr_auxin_inputsubt_rep1.bw 65.1 Mb (ftp)(http) BW
GSE237663_H4K20me1_HW04_1hr_auxin_inputsubt_rep2.bw 64.3 Mb (ftp)(http) BW
GSE237663_H4K20me1_HW04_no_auxin_inputsubt_rep1.bw 67.6 Mb (ftp)(http) BW
GSE237663_H4K20me1_HW04_no_auxin_inputsubt_rep2.bw 65.9 Mb (ftp)(http) BW
GSE237663_PQN85_HW04_1hr_auxin_inputsubt_rep1.bw 59.1 Mb (ftp)(http) BW
GSE237663_PQN85_HW04_1hr_auxin_inputsubt_rep2.bw 63.3 Mb (ftp)(http) BW
GSE237663_PQN85_HW04_no_auxin_inputsubt_rep1.bw 63.8 Mb (ftp)(http) BW
GSE237663_PQN85_HW04_no_auxin_inputsubt_rep2.bw 64.9 Mb (ftp)(http) BW
GSE237663_PQN85_JK06_1hrauxin_avg_chip_peaks.bed.gz 297.3 Kb (ftp)(http) BED
GSE237663_PQN85_JK06_1hrauxin_avg_chip_summits.bed.gz 158.5 Kb (ftp)(http) BED
GSE237663_PQN85_JK06_1hrauxin_inputsubt_avg.bw 75.3 Mb (ftp)(http) BW
GSE237663_RAW.tar 3.0 Mb (http)(custom) TAR (of BED)
GSE237663_SMC3_HW04_1hr_auxin_inputsubt_rep1.bw 59.6 Mb (ftp)(http) BW
GSE237663_SMC3_HW04_1hr_auxin_inputsubt_rep2.bw 65.6 Mb (ftp)(http) BW
GSE237663_SMC3_HW04_no_auxin_inputsubt_rep1.bw 64.9 Mb (ftp)(http) BW
GSE237663_SMC3_HW04_no_auxin_inputsubt_rep2.bw 66.2 Mb (ftp)(http) BW
GSE237663_SMC3_JK06_1hrauxin_inputsubt_rep3.bw 64.2 Mb (ftp)(http) BW
GSE237663_SMC3_JK06_1hrauxin_inputsubt_rep4.bw 60.1 Mb (ftp)(http) BW
GSE237663_SMC3_JK06_1hrauxin_rep3_chip_peaks.bed.gz 226.6 Kb (ftp)(http) BED
GSE237663_SMC3_JK06_1hrauxin_rep4_chip_peaks.bed.gz 172.5 Kb (ftp)(http) BED
GSE237663_chip_processed.tar.gz 731.8 Mb (ftp)(http) TAR
GSE237663_chip_processed_update.tar.gz 366.3 Mb (ftp)(http) TAR
GSE237663_hic_processed.tar.gz 1.6 Gb (ftp)(http) TAR
GSE237663_sample_processed_file_mappings.txt.gz 583 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap