|
| Status |
Public on Feb 02, 2024 |
| Title |
ARID1A Orchestrates SWI/SNF-mediated Sequential Binding of Transcription Factors with ARID1A Loss Driving Pre-memory B Cell Fate and Lymphomagenesis |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| Web link |
https://doi.org/10.1016/j.ccell.2024.02.010
|
| |
|
| Citation(s) |
38458187 |
| |
| Submission date |
Jul 21, 2023 |
| Last update date |
Mar 23, 2024 |
| Contact name |
Christopher Russell Chin |
| E-mail(s) |
chc2077@med.cornell.edu
|
| Phone |
3393640514
|
| Organization name |
Weill Cornell
|
| Lab |
Melnick Lab
|
| Street address |
413 E 69th Street, Belfer Building, BB-1462
|
| City |
New York City |
| State/province |
NY |
| ZIP/Postal code |
10021 |
| Country |
USA |
| |
|
| Platforms (5)
|
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
| GPL30173 |
NextSeq 2000 (Homo sapiens) |
|
| Samples (172)
|
| GSM7657351 |
Arid1aHet-2, scATAC-seq |
| GSM7657352 |
Arid1aHom-2, scATAC-seq |
| GSM7657353 |
WT-2, scATAC-seq |
| GSM7657354 |
WT-3, scATAC-seq |
| GSM7657355 |
WT-1, scRNA-seq |
| GSM7657356 |
Arid1aHom-1, scRNA-seq |
| GSM7657357 |
Arid1aHet-1, scRNA-seq |
| GSM7657358 |
Arid1aHet-2, scRNA-seq |
| GSM7657359 |
Arid1aHom-2, scRNA-seq |
| GSM7657360 |
WT-2, scRNA-seq |
| GSM7657361 |
WT-3, scRNA-seq |
| GSM8046688 |
WT_R1 |
| GSM8046689 |
WT_R2 |
| GSM8046690 |
WT_R3 |
| GSM8046691 |
HET_R1 |
| GSM8046692 |
HET_R2 |
| GSM8046693 |
HET_R3 |
| GSM8046694 |
ctrl_sh1_R1 |
| GSM8046695 |
ctrl_sh1_R2 |
| GSM8046696 |
ctrl_sh2_R1 |
| GSM8046697 |
ctrl_sh2_R2 |
| GSM8046698 |
KO_sh1_R1 |
| GSM8046699 |
KO_sh1_R2 |
| GSM8046700 |
KO_sh2_R1 |
| GSM8046701 |
KO_sh2_R2 |
| GSM8046702 |
TQ1_DMSO_24H_1_20221209 |
| GSM8046703 |
TQ1_DMSO_24H_2_20221209 |
| GSM8046704 |
TQ2_DMSO_24H_1_20221209 |
| GSM8046705 |
TQ2_DMSO_24H_2_20221209 |
| GSM8046706 |
TQ1_FHD_24H_1_20221209 |
| GSM8046707 |
TQ1_FHD_24H_2_20221209 |
| GSM8046708 |
TQ2_FHD_24H_1_20221209 |
| GSM8046709 |
TQ2_FHD_24H_2_20221209 |
| GSM8046710 |
DQ1_DMSO_24H_1_20221209 |
| GSM8046711 |
DQ1_DMSO_24H_2_20221209 |
| GSM8046712 |
DQ2_DMSO_24H_1_20221209 |
| GSM8046713 |
DQ2_DMSO_24H_2_20221209 |
| GSM8046714 |
DQ1_FHD_24H_1_20221209 |
| GSM8046715 |
DQ1_FHD_24H_2_20221209 |
| GSM8046716 |
DQ2_FHD_24H_1_20221209 |
| GSM8046717 |
DQ2_FHD_24H_2_20221209 |
| GSM8046728 |
Arid1a_HET_3U_R1 |
| GSM8046729 |
Arid1a_HET_3U_R2 |
| GSM8046730 |
Arid1a_HET_3U_R3 |
| GSM8046731 |
Arid1a_HET_5U_R1 |
| GSM8046732 |
Arid1a_HET_5U_R2 |
| GSM8046733 |
Arid1a_WT_3U_R1 |
| GSM8046734 |
Arid1a_WT_3U_R2 |
| GSM8046735 |
Arid1a_WT_3U_R3 |
| GSM8046792 |
WT_C4_2 |
| GSM8046793 |
WT_C4_9 |
| GSM8046794 |
WT_C10_10 |
| GSM8046795 |
WT_C10_3 |
| GSM8046796 |
HET_RIVA_14 |
| GSM8046797 |
HET_RIVA_7 |
| GSM8046798 |
HET_C41_4 |
| GSM8046799 |
HET_C41_11 |
| GSM8046800 |
HET_C43_5 |
| GSM8046801 |
HET_C43_12 |
| GSM8046802 |
CB_HET_R1 |
| GSM8046803 |
CB_HET_R2 |
| GSM8046804 |
CB_HET_R3 |
| GSM8046805 |
CB_HOMO_R1 |
| GSM8046806 |
CB_HOMO_R2 |
| GSM8046807 |
CB_HOMO_R3 |
| GSM8046808 |
CB_HOMO_R4 |
| GSM8046809 |
CB_HOMO_R5 |
| GSM8046810 |
CB_WT_R1 |
| GSM8046811 |
CB_WT_R2 |
| GSM8046812 |
CB_WT_R3 |
| GSM8046813 |
CB_WT_R4 |
| GSM8046814 |
CB_WT_R5 |
| GSM8046815 |
CC_HET_R1 |
| GSM8046816 |
CC_HET_R2 |
| GSM8046817 |
CC_HET_R3 |
| GSM8046818 |
CC_HOMO_R1 |
| GSM8046819 |
CC_HOMO_R2 |
| GSM8046820 |
CC_HOMO_R3 |
| GSM8046821 |
CC_HOMO_R4 |
| GSM8046822 |
CC_HOMO_R5 |
| GSM8046823 |
CC_WT_R1 |
| GSM8046824 |
CC_WT_R2 |
| GSM8046825 |
CC_WT_R3 |
| GSM8046826 |
CC_WT_R4 |
| GSM8046827 |
CC_WT_R5 |
| GSM8046828 |
WT_CB_1 |
| GSM8046829 |
WT_CC_1 |
| GSM8046830 |
WT_CB_2 |
| GSM8046831 |
WT_CC_2 |
| GSM8046832 |
WT_CB_3 |
| GSM8046833 |
WT_CC_3 |
| GSM8046834 |
WT_CB_4 |
| GSM8046835 |
WT_CC_4 |
| GSM8046836 |
WT_CB_5 |
| GSM8046837 |
WT_CC_5 |
| GSM8046838 |
HET_CB_6 |
| GSM8046839 |
HET_CC_6 |
| GSM8046840 |
HET_CB_7 |
| GSM8046841 |
HET_CC_7 |
| GSM8046842 |
HET_CB_8 |
| GSM8046843 |
HET_CC_8 |
| GSM8046844 |
HOMO_CB_9 |
| GSM8046845 |
HOMO_CC_9 |
| GSM8046846 |
HOMO_CB_10 |
| GSM8046847 |
HOMO_CC_10 |
| GSM8046848 |
HOMO_CB_11 |
| GSM8046849 |
HOMO_CC_11 |
| GSM8046850 |
HOMO_CB_12 |
| GSM8046851 |
HOMO_CC_12 |
| GSM8157383 |
H3K27ac_Arid1aHet_R1.ChIP |
| GSM8157384 |
H3K27ac_Arid1aWt_R1.ChIP |
| GSM8157385 |
Pbrm1_Arid1aHet_R1.ChIP |
| GSM8157386 |
Pbrm1_Arid1aWt_R1.ChIP |
| GSM8157387 |
Smarca4_Arid1aHet_R1.ChIP |
| GSM8157388 |
Smarca4_Arid1aWt_R1.ChIP |
| GSM8157389 |
Pu1_Arid1aHet_R1.ChIP |
| GSM8157390 |
Pu1_Arid1aHet_R2.ChIP |
| GSM8157391 |
Pu1_Arid1aWt_R1.ChIP |
| GSM8157392 |
Pu1_Arid1aWt_R2.ChIP |
| GSM8157393 |
Input_Arid1aHet_R1 |
| GSM8157394 |
Input_Arid1aHet_R2 |
| GSM8157395 |
Input_Arid1aWt_R1 |
| GSM8157396 |
Input_Arid1aWt_R2 |
| GSM8157397 |
ARID1A_HET_1 |
| GSM8157398 |
ARID1A_HET_2 |
| GSM8157399 |
ARID1A_HET_3 |
| GSM8157400 |
ARID1A_WT_1 |
| GSM8157401 |
ARID1A_WT_2 |
| GSM8157402 |
ARID1A_WT_3 |
| GSM8157403 |
BRD9_HET_1 |
| GSM8157404 |
BRD9_HET_2 |
| GSM8157405 |
BRD9_HET_3 |
| GSM8157406 |
BRD9_WT_1 |
| GSM8157407 |
BRD9_WT_2 |
| GSM8157408 |
BRD9_WT_3 |
| GSM8157409 |
SMARCC1_HET_1 |
| GSM8157410 |
SMARCC1_HET_2 |
| GSM8157411 |
SMARCC1_HET_3 |
| GSM8157412 |
SMARCC1_WT_1 |
| GSM8157413 |
SMARCC1_WT_2 |
| GSM8157414 |
SMARCC1_WT_3 |
| GSM8157415 |
H3.3-active_HET_1 |
| GSM8157416 |
H3.3-active_HET_2 |
| GSM8157417 |
H3.3-active_HET_3 |
| GSM8157418 |
H3.3-active_WT_1 |
| GSM8157419 |
H3.3-active_WT_2 |
| GSM8157420 |
H3.3-active_WT_3 |
| GSM8157421 |
PU1_HET_1 |
| GSM8157422 |
PU1_HET_2 |
| GSM8157423 |
PU1_WT_1 |
| GSM8157424 |
PU1_WT_2 |
| GSM8157425 |
H3K27me3_HET_1 |
| GSM8157426 |
H3K27me3_HET_2 |
| GSM8157427 |
H3K27me3_WT_1 |
| GSM8157428 |
H3K27me3_WT_2 |
| GSM8157429 |
IgG_HET_1 (CnR Run A) |
| GSM8157430 |
IgG_HET_2 (CnR Run A) |
| GSM8157431 |
IgG_HET_3 (CnR Run A) |
| GSM8157432 |
IgG_HET_4 (CnR Run A) |
| GSM8157433 |
IgG_WT_1 (CnR Run A) |
| GSM8157434 |
IgG_WT_2 (CnR Run A) |
| GSM8157435 |
IgG_WT_3 (CnR Run A) |
| GSM8157436 |
IgG_WT_4 (CnR Run A) |
| GSM8157437 |
IgG_HET_1 (CnR Run B) |
| GSM8157438 |
IgG_HET_2 (CnR Run B) |
| GSM8157439 |
IgG_HET_3 (CnR Run B) |
| GSM8157440 |
IgG_WT_1 (CnR Run B) |
| GSM8157441 |
IgG_WT_2 (CnR Run B) |
| GSM8157442 |
IgG_WT_3 (CnR Run B) |
|
| This SuperSeries is composed of the following SubSeries:
|
| GSE237987 |
ARID1A Orchestrates SWI/SNF-mediated Sequential Binding of Transcription Factors and Its Deficiency Drives Pre-memory B-cell Fate and Lymphomagenesis [Arid1a_multiome] |
| GSE254588 |
SWI/SNF Chromatin Remodeling Complex Orchestrates Sequential Binding of Key Transcription Factors in B Cells and Restricts Aggressive Lymphoma [human ATAC-Seq] |
| GSE254589 |
SWI/SNF Chromatin Remodeling Complex Orchestrates Sequential Binding of Key Transcription Factors in B Cells and Restricts Aggressive Lymphoma [human FHD286 ATAC-Seq] |
| GSE254591 |
SWI/SNF Chromatin Remodeling Complex Orchestrates Sequential Binding of Key Transcription Factors in B Cells and Restricts Aggressive Lymphoma [human Mnase-Seq] |
| GSE254593 |
SWI/SNF Chromatin Remodeling Complex Orchestrates Sequential Binding of Key Transcription Factors in B Cells and Restricts Aggressive Lymphoma [human RNA-Seq] |
| GSE254594 |
SWI/SNF Chromatin Remodeling Complex Orchestrates Sequential Binding of Key Transcription Factors in B Cells and Restricts Aggressive Lymphoma [mouse ATAC-Seq] |
| GSE254595 |
SWI/SNF Chromatin Remodeling Complex Orchestrates Sequential Binding of Key Transcription Factors in B Cells and Restricts Aggressive Lymphoma [mouse RNA-Seq] |
| GSE262093 |
SWI/SNF Chromatin Remodeling Complex Orchestrates Sequential Binding of Key Transcription Factors in B Cells and Restricts Aggressive Lymphoma [human ChIP-seq] |
| GSE262094 |
SWI/SNF Chromatin Remodeling Complex Orchestrates Sequential Binding of Key Transcription Factors in B Cells and Restricts Aggressive Lymphoma [human CUT&RUN] |
|
| Relations |
| BioProject |
PRJNA997344 |
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