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Series GSE238201 Query DataSets for GSE238201
Status Public on Mar 01, 2024
Title Loss of PPARα function promotes epigenetic dysregulation of lipid homeostasis driving ferroptosis and pyroptosis lipotoxicity in Metabolic Dysfunction Associated Steatotic Liver Disease (MASLD) [RNA-seq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Metabolic Dysfunction Associated Steatotic Liver Disease (MASLD) is a growing epidemic with an estimated prevalence of 20‑30% in Europe and the most common cause of chronic liver disease worldwide. The onset and progression of MASLD are orchestrated by an interplay of the metabolic environment with genetic and epigenetic factors. Emerging evidence suggests altered DNA methylation pattern as a major determinant of MASLD pathogenesis coinciding with progressive DNA hypermethylation and gene silencing of the liver‑specific nuclear receptor PPARα, a key regulator of lipid metabolism. To investigate how PPARα loss of function contributes to epigenetic dysregulation in MASLD pathology, we studied transcriptome profile changes that could induce changes in DNA methylation in liver biopsies of WT and hepatocyte‑specific PPARα KO mice, following a 6‑week CDAHFD (choline-deficient, L-amino acid-defined, high-fat diet) or chow diet. Interestingly, genetic loss of PPARα function in hepatocyte‑specific KO mice could be phenocopied by a 6-week CDAHFD diet in WT mice which promotes epigenetic silencing of PPARα function via DNA hypermethylation, similar to MASLD pathology. Remarkably, genetic and lipid diet‑induced loss of PPARα function triggers compensatory transcription of multiple lipid sensing transcription factors and epigenetic writer-eraser-reader proteins, which promotes the epigenetic transition from lipid metabolic stress towards ferroptosis and pyroptosis lipid hepatoxicity pathways associated with advanced MASLD. In conclusion, we show that PPARα function is essential to support lipid homeostasis and to suppress the epigenetic progression of ferroptosis‑pyroptosis lipid damage associated pathways towards MASLD fibrosis.
 
Overall design mRNA profiles of liver biopsies of hepatocyte-specific PPARα KO C57BL/6J (PPARafl/fl AlbuminCreTg/+) mice and WT C57BL/6J (PPARafl/fl AlbuminCre+/+) mice were determined after a 6 week chow or CDAHFD
 
Contributor(s) Theys C, Mateiu L
Citation(s) 39086681
Submission date Jul 25, 2023
Last update date Aug 26, 2024
Contact name Claudia Theys
E-mail(s) claudia.theys@uantwerpen.be
Organization name Universiteit Antwerpen
Department FBD
Lab PPES
Street address Universiteitsplein,1
City Wilrijk
State/province Antwerpen (nl)
ZIP/Postal code 2610
Country Belgium
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (12)
GSM7660271 WT_CHOW_1
GSM7660272 WT_CHOW_2
GSM7660273 WT_CHOW_3
This SubSeries is part of SuperSeries:
GSE239279 Loss of PPARα function promotes epigenetic dysregulation of lipid homeostasis driving ferroptosis and pyroptosis lipotoxicity in Metabolic Dysfunction Associated Steatotic Liver Disease (MASLD)
Relations
BioProject PRJNA998364

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE238201_table_input_gene_counts.tsv.gz 678.6 Kb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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