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Series GSE23863 Query DataSets for GSE23863
Status Public on Sep 01, 2010
Title Regional Immune Response to Trichostrongylis colubriformis - Gene Expression during Challenge of Immunized Sheep
Organism Ovis aries
Experiment type Expression profiling by array
Summary Afferent Lymph was collected from up to 5 pen raised, nematode naïve, outbreed Romney sheep (Tag No’s 1001, 1002, 1003, 1004, 1006) over a 12 week period. During this time a Pre-Infection sample was collected, the sheep were immunised by 3 truncated (2 week) T. colubiformis infections (40,000 Tc) followed by a Challenge Infection with 40,000 T. colubiformis L3 (Challenge Infection weeks 1-3). The Challenge Infection will enable us to determine changes in gene expression when the sheep gut rejects the parasitic nematodes.
 
Overall design The overall design is summarised in the below table.
 
Contributor(s) Knight J, Pernthaner T, Hein W
Citation(s) 20950493
Submission date Aug 29, 2010
Last update date Sep 18, 2012
Contact name Alan Francis McCulloch
E-mail(s) alan.mcculloch@agresearch.co.nz
Phone 64 3 4899080
Organization name AgResearch NZ
Street address Invermay
City Puddle Alley
State/province Mosgiel
ZIP/Postal code n/a
Country New Zealand
 
Platforms (2)
GPL4072 11K Ovita Ovine Array print 70
GPL4077 20K Ovita Ovine Array print 73
Samples (12)
GSM588380 70-25
GSM588407 70-27
GSM588409 70-3
This SubSeries is part of SuperSeries:
GSE23890 Regional Immune Response to Trichostrongylis colubriformis in Sheep
Relations
BioProject PRJNA133175

Data table header descriptions
ID
slide
Cy5 red sheep
Cy 3 green sheep
Rev
Cy 5 red treatment
Cy 3 green treatment
sheep Pre-Infection pool
sheep Challenge Infection - week 1 pool
sheep Challenge Infection - week 2 pool
sheep Challenge Infection - week 3 pool
block

Data table
ID slide Cy5 red sheep Cy 3 green sheep Rev Cy 5 red treatment Cy 3 green treatment sheep Pre-Infection pool sheep Challenge Infection - week 1 pool sheep Challenge Infection - week 2 pool sheep Challenge Infection - week 3 pool block
1268 70-25 1001-6 1001-6 0 Chall Infect wk1 Pre-Infection 1001-6 1001-6 1
1285 70-27 1001-6 1001-6 1 Pre-Infection Chall Infect wk1 1001-6 1001-6 1
757 70-3 1001-6 1001-6 0 Chall Infect wk2 Pre-Infection 1001-6 1001-6 2
758 70-4 1001-6 1001-6 1 Pre-Infection Chall Infect wk2 1001-6 1001-6 2
869 70-15 1001-6 1001-6 0 Chall Infect wk3 Pre-Infection 1001-6 1001-6 3
1269 70-26 1001-6 1001-6 1 Pre-Infection Chall Infect wk3 1001-6 1001-6 3
1310 70-28 1001-6 1001-6 0 Chall Infect wk2 Chall Infect wk1 1001-6 1001-6 4
1290 73-68 1001-6 1001-6 1 Chall Infect wk1 Chall Infect wk2 1001-6 1001-6 4
867 70-16 1001-6 1001-6 0 Chall Infect wk3 Chall Infect wk2 1001-6 1001-6 5
1287 73-70 1001-6 1001-6 1 Chall Infect wk2 Chall Infect wk3 1001-6 1001-6 5
1286 73-66 1001-6 1001-6 0 Chall Infect wk3 Chall Infect wk1 1001-6 1001-6 6
1289 73-67 1001-6 1001-6 1 Chall Infect wk1 Chall Infect wk3 1001-6 1001-6 6

Total number of rows: 12


Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary data files not provided
Processed data included within Sample table

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