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GEO accession:
Series GSE240362
Query DataSets for GSE240362
Status
Public on May 03, 2024
Title
Cancer-Specific Epigenome Identifies Oncogenic Hijacking by Nuclear Factor I Family Proteins for Medulloblastoma Progression
Organism
Mus musculus
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation missing
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Submission date
Aug 08, 2023
Last update date
May 04, 2024
Contact name
Kohei Kumegawa
E-mail(s)
kohei.kumegawa@gmail.com
Organization name
Japanese Foundation for Cancer Research
Street address
3-8-31 Ariake, Koto-ku
City
Tokyo
ZIP/Postal code
135-8550
Country
Japan
Platforms (1)
GPL21626
NextSeq 550 (Mus musculus)
Samples (54)
Less...
More...
GSM7696730
20211110C-GNP-1-NFIA_S1_R1.fastq.gz
GSM7696731
20211110C-GNP-1-NFIB_S2_R1.fastq.gz
GSM7696732
20211110C-GNP-2-NFIA_S4_R1.fastq.gz
GSM7696733
20211110C-GNP-2-NFIB_S5_R1.fastq.gz
GSM7696734
20211201C-GNP-NFIA_merged_R1.fastq.gz
GSM7696735
20211201C-GNP-NFIB_merged_R1.fastq.gz
GSM7696736
20211110C-Hyperplasia-1-NFIA_S7_R1.fastq.gz
GSM7696737
20211110C-Hyperplasia-1-NFIB_S8_R1.fastq.gz
GSM7696738
20211110C-Hyperplasia-2-NFIA_S10_R1.fastq.gz
GSM7696739
20211110C-Hyperplasia-2-NFIB_S11_R1.fastq.gz
GSM7696740
20211201C-Hyperplasia-NFIA_merged_R1.fastq.gz
GSM7696741
20211201C-Hyperplasia-NFIB_merged_R1.fastq.gz
GSM7696742
20211116C-msTumor-NFIA_S7_R1.fastq.gz
GSM7696743
20211116C-msTumor-NFIB_S8_R1.fastq.gz
GSM7696744
20220118C-Mt-NFIA-rep2_S6_R1.fastq.gz
GSM7696745
20220118C-Mt-NFIB-rep2_S7_R1.fastq.gz
GSM7696746
20220113C-Mt-NFIA-rep3_S1_R1.fastq.gz
GSM7696747
20220113C-Mt-NFIB-rep3_S2_R1.fastq.gz
GSM7696748
Ptch1GNP ATAC 1
GSM7696749
Ptch1GNP ATAC 2
GSM7696750
Ptch1GNP ATAC 3
GSM7696751
PNC ATAC 1
GSM7696752
PNC ATAC 2
GSM7696753
PNC ATAC 3
GSM7696754
Tumor ATAC 1
GSM7696755
Tumor ATAC 2
GSM7696756
Tumor ATAC 3
GSM7696757
VDR ATAC 1
GSM7696758
VDR ATAC 2
GSM7696759
VDR ATAC 3
GSM7696760
VDR ATAC siNC 1
GSM7696761
VDR ATAC siNC 2
GSM7696762
VDR ATAC siNC 3
GSM7696763
VDR ATAC siNfia 1
GSM7696764
VDR ATAC siNfia 2
GSM7696765
VDR ATAC siNfia 3
GSM7696766
VDR ATAC siNfib 1
GSM7696767
VDR ATAC siNfib 2
GSM7696768
VDR ATAC siNfib 3
GSM7791830
GNP H3K27Ac 1
GSM7791831
GNP H3K27Ac 2
GSM7791832
GNP H3K27Ac 3
GSM7791833
PNC H3K27Ac 1
GSM7791834
PNC H3K27Ac 2
GSM7791835
PNC H3K27Ac 3
GSM7791836
Tumor H3K27Ac 1
GSM7791837
Tumor H3K27Ac 2
GSM7791838
Tumor H3K27Ac 3
GSM7791839
Ptch1GNP single cell multiome ATAC
GSM7791840
Ptch1GNP single cell multiome RNA
GSM7791841
PNC single cell multiome ATAC
GSM7791842
PNC single cell multiome RNA
GSM7791843
Tumor single cell multiome ATAC
GSM7791844
Tumor single cell multiome RNA
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE240359
Dynamic Chromatin Alteration Induces Oncogenic Hijacking by Essential Transcriptional Factors during Medulloblastoma Tumorigenesis [CUT&Tag]
GSE240360
Dynamic Chromatin Alteration Induces Oncogenic Hijacking by Essential Transcriptional Factors during Medulloblastoma Tumorigenesis [ATAC-Seq]
GSE243608
Dynamic Chromatin Alteration Induces Oncogenic Hijacking by Essential Transcriptional Factors during Medulloblastoma Tumorigenesis [[CUT&Tag 2]
GSE243609
Dynamic Chromatin Alteration Induces Oncogenic Hijacking by Essential Transcriptional Factors during Medulloblastoma Tumorigenesis [Multiome]
Relations
BioProject
PRJNA1003431
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE240362_RAW.tar
2.9 Gb
(http)
(custom)
TAR (of BED, H5, TSV)
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