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Series GSE240415 Query DataSets for GSE240415
Status Public on Oct 25, 2023
Title Brain methylome remodeling sustains neuronal activity gene expression in mice exposed to maternal immune activation [5hmc]
Organism Mus musculus
Experiment type Methylation profiling by high throughput sequencing
Summary Maternal infections have been linked to various neuropsychiatric disorders that may later emerge in offspring. 5-hydroxymethylcytosine (5hmC) and 5-methylcytosine (5mC) are key DNA modifications but their roles in maternal infection remain to be elucidated. It has been documented that Zika virus (ZIKV) infection during pregnancy leads to structural brain defects such as microcephaly in offspring. However, whether and how offspring exposed to maternal ZIKV infection develop neurocognitive complications remain largely unknown. Here we report that ZIKV infection during mouse pregnancy leads to offspring with depression- and anxiety-like behaviors, which are transmitted to the next generation. Single nucleus RNA sequencing in prefrontal cortex (PFC) of ZIKV offspring mice revealed cell type-specific gene dysregulation associated with neuropsychiatric lesions. Genome-wide 5hmC, 5mC, and transcriptome profiling in ZIKV PFC revealed an overall loss of 5hmC and an increase of 5mC in intragenic regions, associated with transcriptional changes in key functional genes. Gain-of-5hmC regions were mainly located in intergenic transposable elements (TEs) coupled with decreased 5mC and dynamic TE expression. These results provide the first 5hmC study in maternal infection and suggest that maternal ZIKV infection remodels methylome and gene expression in offspring mouse brains, contributing to transgenerational behavior changes.
 
Overall design NeuN+ and NeuN- cell population from ZIKA virus treatment and mock group were subject for 5hmC-Seal-seq
 
Contributor(s) Ma L, Wang F, Li Y
Citation(s) 38030616
Submission date Aug 08, 2023
Last update date Dec 14, 2023
Contact name Bing Yao
E-mail(s) bing.yao@emory.edu
Phone 3523596473
Organization name Emory University
Department Department of Human Genetics
Street address 615 Michael Street
City Atlanta
ZIP/Postal code 30322
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (16)
GSM7697729 Mock_N_hmC_1
GSM7697730 Mock_N_hmC_2
GSM7697731 Mock_N_hmC_3
This SubSeries is part of SuperSeries:
GSE240417 Brain methylome remodeling sustains neuronal activity gene expression in mice exposed to maternal immune activation
Relations
BioProject PRJNA1003538

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Supplementary file Size Download File type/resource
GSE240415_RAW.tar 41.1 Mb (http)(custom) TAR (of NARROWPEAK)
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Raw data are available in SRA
Processed data provided as supplementary file

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