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| Status |
Public on Feb 27, 2024 |
| Title |
The AsiDNA™ decoy mimicking DSBs protects the normal tissue from radiation toxicity through a DNA-PK/p53/p21-dependent G1/S arrest. |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
AsiDNA, a cholesterol-coupled oligonucleotide mimicking double-stranded DNA breaks, was developed to sensitize tumour cells to radio- and chemotherapy. This drug acts as a decoy hijacking the DNA damage response. Previous studies have demonstrated that standalone AsiDNA administration is well tolerated with no additional adverse effects when combined with chemo- and/or radiotherapy. This lack of normal tissue complication encouraged further examination into the role of AsiDNA in normal cells. The delayed development of pulmonary fibrosis after FLASH-RT compared to CONV-RT might be a known phenomenon but the complexity behind this specific tissue response is completely unidentified. Radiation has been shown to impact various cell types presented in the lung, resulting in changes in cellular activity and numerous pathway activations. Current unpublished data suggest a clear variety between the CONV and FLASH-RT gene signatures examined using single cell RNA sequencing. As the combined treatment of AsiDNA with CONV-RT resulted in a delay in radiation induced lung fibrosis compared to CONV-RT standalone, it is to be questioned if the signature of AsiDNA CONV-RT is similar to FLASH-RT or CONV-RT. To characterize the similarity in cellular changes and expression signatures in lungs 5 months post CONV-RT, FLASH-RT, AsiDNA CONV-RT or non-irradiated (Control) treatment. Single cell RNA sequencing of irradiated lungs revealed a closer resemblance between CONV AsiDNA and FLASH-RT in profibrotic gene signatures within the fibroblast and macrophages population, in comparison to CONV-RT standalone. Collectively, this information indicates that the activity of AsiDNA and FLASH-RT could draw upon identical mechanism interference to result in the protective capacities within the normal tissue.
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| Overall design |
Single-cell suspensions were prepared from 5 month C57BL/6J mice and single cell RNA-seq libraries were generated using 3' V3 or 3'V3 NextGem chemistry kit on Chromium Single cell controller (10x Genomics). This dataset includes 3 samples: 1 sample 5 months 13 Gy post-CONV irradiation; 1 sample 5 months 13 Gy post-CONV irradiation with AsiDNA drug treatment; 1 sample 5 months 13 Gy post-FLASH irradiation.
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| Contributor(s) |
Sesink A, Dubail M, Soulier J, Fouillade C, Girard PM |
| Citation(s) |
38476631 |
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| Submission date |
Aug 09, 2023 |
| Last update date |
Mar 20, 2024 |
| Contact name |
Anouk Sesink |
| E-mail(s) |
anouk.sesink@curie.fr
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| Organization name |
Institut Curie
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| Street address |
Rue Henri Becquerel
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| City |
Orsay |
| ZIP/Postal code |
91401 |
| Country |
France |
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| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (3) |
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| Relations |
| BioProject |
PRJNA1003948 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE240510_Hyp_IR_100vC_EdgeR_output.txt.gz |
339.5 Kb |
(ftp)(http) |
TXT |
| GSE240510_Hyp_IR_2180vC_EdgeR_output.txt.gz |
333.1 Kb |
(ftp)(http) |
TXT |
| GSE240510_Hyp_IR_500vC_EdgeR_output.txt.gz |
332.4 Kb |
(ftp)(http) |
TXT |
| GSE240510_Hyp_IR_counts_s2.txt.gz |
662.5 Kb |
(ftp)(http) |
TXT |
| GSE240510_RAW.tar |
41.3 Mb |
(http)(custom) |
TAR (of CSV) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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