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Series GSE240988 Query DataSets for GSE240988
Status Public on Dec 08, 2023
Title Mitochondrial GpC and CpG DNA hypermethylation cause metabolic stress induced mitophagy and cholestophagy
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Metabolic dysfunction associated steatotic liver disease (MASLD) is characterized by a constant accumulation of lipids in the liver. This lipotoxicity in the liver is associated with dysregulation of the first step in lipid catabolism called beta oxidation in the mitochondrial matrix, eventually leading to mitochondrial dysfunction. To evaluate possible involvement of mitochondrial DNA methylation in this lipid metabolic dysfunction we investigated the functional metabolic effects of mitochondrial overexpression of CpG (MSssI) and GpC (MCviPI) DNA methyltransferases in relation to gene expression and (mito)epigenetic signatures. Overall, the results show that mitochondrial GpC and to a lesser extent CpG methylation increase bile acid metabolic gene expression, inducing cholestasis by mito-nuclear epigenetic reprogramming. Moreover, increased expression of metabolic nuclear receptors in both MSssI and MCviPI cells promote mitochondrial swelling and induce basal overactivation of mitochondrial respiration which favours lipid accumulation and metabolic-stress induced mitophagy and autophagy stress responses. Altogether GpC and CpG mitochondrial induce a metabolic challenging environment that is similar to mitochondrial dysfunction in the progression of MASLD.
 
Overall design methylation profiles of GpC (MCviPI) or GpC mutant (MCviPI_mutant) DNMT overexpressing cell lines, both untreated or after a 24h treatment with 1mM FFA
 
Contributor(s) Theys C, Scheepers A, Ibrahim J
Citation(s) 38003603
Submission date Aug 16, 2023
Last update date Dec 09, 2023
Contact name Claudia Theys
E-mail(s) claudia.theys@uantwerpen.be
Organization name Universiteit Antwerpen
Department FBD
Lab PPES
Street address Universiteitsplein,1
City Wilrijk
State/province Antwerpen (nl)
ZIP/Postal code 2610
Country Belgium
 
Platforms (1)
GPL21145 Infinium MethylationEPIC
Samples (12)
GSM7713354 Mutant_1
GSM7713355 Mutant_2
GSM7713356 Mutant_3
Relations
BioProject PRJNA1006007

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE240988_206466480087_bval.csv.gz 21.0 Mb (ftp)(http) CSV
GSE240988_206466480094_bval.csv.gz 58.2 Mb (ftp)(http) CSV
GSE240988_RAW.tar 330.2 Mb (http)(custom) TAR (of IDAT)
GSE240988_metadata.xlsx 12.7 Kb (ftp)(http) XLSX
Processed data are available on Series record

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