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| Status |
Public on Sep 11, 2023 |
| Title |
Pharmacologic inhibition of BAF chromatin remodeling complexes as a therapeutic approach to transcription factor-dependent cancers |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Aug 22, 2023 |
| Last update date |
Sep 12, 2023 |
| Contact name |
Salih Topal |
| E-mail(s) |
stopal@foghorntx.com
|
| Organization name |
Foghorn Therapeutics
|
| Street address |
500 Technology Square Suite 700
|
| City |
Cambridge |
| ZIP/Postal code |
02139 |
| Country |
USA |
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| Platforms (5)
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| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
| GPL21290 |
Illumina HiSeq 3000 (Homo sapiens) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (119)
|
| GSM7729079 |
92-1,DMSO,4h,ATACseq,biol rep1 |
| GSM7729080 |
92-1,DMSO,4h,ATACseq,biol rep2 |
| GSM7729081 |
92-1,DMSO,4h,ATACseq,biol rep3 |
| GSM7729082 |
92-1,FHT-1015, 4h,ATACseq, biol rep 1 |
| GSM7729083 |
92-1,FHT-1015, 4h,ATACseq, biol rep 2 |
| GSM7729084 |
92-1,FHT-1015, 4h,ATACseq, biol rep 3 |
| GSM7729085 |
22RV1,DMSO,4h,ATACseq,biol rep1 |
| GSM7729086 |
22RV1,DMSO,4h,ATACseq,biol rep2 |
| GSM7729087 |
22RV1,DMSO,4h,ATACseq,biol rep3 |
| GSM7729088 |
22RV1,FHT-1015, 4h,ATACseq, biol rep 1 |
| GSM7729089 |
22RV1,FHT-1015, 4h,ATACseq, biol rep 2 |
| GSM7729090 |
22RV1,FHT-1015, 4h,ATACseq, biol rep 3 |
| GSM7729091 |
RD,DMSO,4h,ATACseq,biol rep1 |
| GSM7729092 |
RD,DMSO,4h,ATACseq,biol rep2 |
| GSM7729093 |
RD,DMSO,4h,ATACseq,biol rep3 |
| GSM7729094 |
RD,FHT-1015, 4h,ATACseq, biol rep 1 |
| GSM7729095 |
RD,FHT-1015, 4h,ATACseq, biol rep 2 |
| GSM7729096 |
RD,FHT-1015, 4h,ATACseq, biol rep 3 |
| GSM7729097 |
A375,DMSO,4h,ATACseq,biol rep1 |
| GSM7729098 |
A375,DMSO,4h,ATACseq,biol rep2 |
| GSM7729099 |
A375,DMSO,4h,ATACseq,biol rep3 |
| GSM7729100 |
A375,FHT-1015, 4h,ATACseq, biol rep 1 |
| GSM7729101 |
A375,FHT-1015, 4h,ATACseq, biol rep 2 |
| GSM7729102 |
A375,FHT-1015, 4h,ATACseq, biol rep 3 |
| GSM7729103 |
DU4475,DMSO,4h,ATACseq,biol rep1 |
| GSM7729104 |
DU4475,DMSO,4h,ATACseq,biol rep2 |
| GSM7729105 |
DU4475,DMSO,4h,ATACseq,biol rep3 |
| GSM7729106 |
DU4475,FHT-1015, 4h,ATACseq, biol rep 1 |
| GSM7729107 |
DU4475,FHT-1015, 4h,ATACseq, biol rep 2 |
| GSM7729108 |
DU4475,FHT-1015, 4h,ATACseq, biol rep 3 |
| GSM7729109 |
HCT116,DMSO,4h,ATACseq,biol rep1 |
| GSM7729110 |
HCT116,DMSO,4h,ATACseq,biol rep2 |
| GSM7729111 |
HCT116,DMSO,4h,ATACseq,biol rep3 |
| GSM7729112 |
HCT116,FHT-1015, 4h,ATACseq, biol rep 1 |
| GSM7729113 |
HCT116,FHT-1015, 4h,ATACseq, biol rep 2 |
| GSM7729114 |
HCT116,FHT-1015, 4h,ATACseq, biol rep 3 |
| GSM7729115 |
MV411,DMSO,4h,ATACseq,biol rep1 |
| GSM7729116 |
MV411,DMSO,4h,ATACseq,biol rep2 |
| GSM7729117 |
MV411,DMSO,4h,ATACseq,biol rep3 |
| GSM7729118 |
MV411,FHT-1015, 4h,ATACseq, biol rep 1 |
| GSM7729119 |
MV411,FHT-1015, 4h,ATACseq, biol rep 2 |
| GSM7729120 |
MV411,FHT-1015, 4h,ATACseq, biol rep 3 |
| GSM7729121 |
92-1,DMSO,4h,ChIP-seq,H3K27ac |
| GSM7729122 |
92-1,FHT-1015,4h,ChIP-seq,H3K27ac |
| GSM7729123 |
92-1,DMSO,4h,ChIP-seq,SMARCA4 |
| GSM7729124 |
92-1,FHT-1015,4h,ChIP-seq,SMARCA4 |
| GSM7729125 |
92-1,DMSO,4h,ChIP-seq,MITF |
| GSM7729126 |
92-1,FHT-1015,4h,ChIP-seq,MITF |
| GSM7729127 |
92-1,DMSO,4h,ChIP-seq,AP-2 |
| GSM7729128 |
92-1,FHT-1015,4h,ChIP-seq,AP-2 |
| GSM7729129 |
92-1,DMSO,4h,ChIP-seq,SOX10 |
| GSM7729130 |
92-1,FHT-1015,4h,ChIP-seq,SOX10 |
| GSM7729131 |
92-1,DMSO,4h,ChIP-seq,input |
| GSM7729132 |
MP46,DMSO,15min,PRO-seq,Rep1 |
| GSM7729133 |
MP46,DMSO,15min,PRO-seq,Rep2 |
| GSM7729134 |
MP46,DMSO,1h,PRO-seq,Rep1 |
| GSM7729135 |
MP46,DMSO,1h,PRO-seq,Rep2 |
| GSM7729136 |
MP46,FHT1015,15min,PRO-seq,Rep1 |
| GSM7729137 |
MP46,FHT1015,15min,PRO-seq,Rep2 |
| GSM7729138 |
MP46,FHT1015,1h,PRO-seq,Rep1 |
| GSM7729139 |
MP46,FHT1015,1h,PRO-seq,Rep2 |
| GSM7729140 |
92-1,DMSO,4h, RNA-seq,biol rep1 |
| GSM7729141 |
92-1,DMSO,4h, RNA-seq,biol rep2 |
| GSM7729142 |
92-1,DMSO,4h, RNA-seq,biol rep3 |
| GSM7729143 |
92-1,DMSO,24h, RNA-seq,biol rep1 |
| GSM7729144 |
92-1,DMSO,24h, RNA-seq,biol rep2 |
| GSM7729145 |
92-1,DMSO,24h,RNA-seq,biol rep3 |
| GSM7729146 |
92-1,FHT-1015, 4h,RNA-seq,biol rep 1 |
| GSM7729147 |
92-1,FHT-1015, 4h, RNA-seq,biol rep 2 |
| GSM7729148 |
92-1,FHT-1015, 4h,RNA-seq,biol rep 3 |
| GSM7729149 |
92-1,FHT-1015, 24h,RNA-seq,biol rep 1 |
| GSM7729150 |
92-1,FHT-1015, 24h,RNA-seq,biol rep 2 |
| GSM7729151 |
92-1,FHT-1015, 24h,RNA-seq,biol rep 3 |
| GSM7729152 |
MEL202,DMSO,4h,RNA-seq,biol rep1 |
| GSM7729153 |
MEL202,DMSO,4h, biol rep2 |
| GSM7729154 |
MEL202,DMSO,4h, biol rep3 |
| GSM7729155 |
MEL202,DMSO,24h, biol rep1 |
| GSM7729156 |
MEL202,DMSO,24h, biol rep2 |
| GSM7729157 |
MEL202,DMSO,24h, biol rep3 |
| GSM7729158 |
MEL202,FHT-1015, 4h, biol rep 1 |
| GSM7729159 |
MEL202,FHT-1015, 4h, biol rep 2 |
| GSM7729160 |
MEL202,FHT-1015, 4h, biol rep 3 |
| GSM7729161 |
MEL202,FHT-1015, 24h, biol rep 1 |
| GSM7729162 |
MEL202,FHT-1015, 24h, biol rep 2 |
| GSM7729163 |
MEL202,FHT-1015, 24h, biol rep 3 |
| GSM7729164 |
MP41,DMSO,4h, biol rep1 |
| GSM7729165 |
MP41,DMSO,4h, biol rep2 |
| GSM7729166 |
MP41,DMSO,4h, biol rep3 |
| GSM7729167 |
MP41,DMSO,24h, biol rep1 |
| GSM7729168 |
MP41,DMSO,24h, biol rep2 |
| GSM7729169 |
MP41,DMSO,24h, biol rep3 |
| GSM7729170 |
MP41,FHT-1015, 4h, biol rep 1 |
| GSM7729171 |
MP41,FHT-1015, 4h, biol rep 2 |
| GSM7729172 |
MP41,FHT-1015, 4h, biol rep 3 |
| GSM7729173 |
MP41,FHT-1015, 24h, biol rep 1 |
| GSM7729174 |
MP41,FHT-1015, 24h, biol rep 2 |
| GSM7729175 |
MP41,FHT-1015, 24h, biol rep 3 |
| GSM7729176 |
92-1,DMSO,4h, biol rep4 |
| GSM7729177 |
92-1,DMSO,4h, biol rep5 |
| GSM7729178 |
92-1,DMSO,4h, biol rep6 |
| GSM7729179 |
92-1,DMSO,24h, biol rep4 |
| GSM7729180 |
92-1,DMSO,24h, biol rep5 |
| GSM7729181 |
92-1,DMSO,24h, biol rep6 |
| GSM7729182 |
92-1,IDE196,4h, biol rep1 |
| GSM7729183 |
92-1,IDE196,4h, biol rep2 |
| GSM7729184 |
92-1,IDE196,4h, biol rep3 |
| GSM7729185 |
92-1,IDE196,24h, biol rep1 |
| GSM7729186 |
92-1,IDE196,24h, biol rep2 |
| GSM7729187 |
92-1,IDE196,24h, biol rep3 |
| GSM7729188 |
MP41 wt |
| GSM7729189 |
MP41 Resistant 1 |
| GSM7729190 |
MP41 Resistant 2 |
| GSM7729191 |
MP41 Resistant 3 |
| GSM7729192 |
MP41 Resistant 4 |
| GSM7729193 |
MP41 Resistant 5 |
| GSM7729194 |
MP41 Resistant 6 |
| GSM7729195 |
MP41 Resistant 7 |
| GSM7729196 |
MP41 Resistant 8 |
| GSM7729197 |
MP41 Resistant 9 |
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| This SuperSeries is composed of the following SubSeries:
|
| GSE241445 |
Pharmacologic inhibition of BAF chromatin remodeling complexes as a therapeutic approach to transcription factor-dependent cancers [ATAC-seq] |
| GSE241446 |
Pharmacologic inhibition of BAF chromatin remodeling complexes as a therapeutic approach to transcription factor-dependent cancers [ChIP-seq] |
| GSE241447 |
Pharmacologic inhibition of BAF chromatin remodeling complexes as a therapeutic approach to transcription factor-dependent cancers [PRO-seq] |
| GSE241448 |
Pharmacologic inhibition of BAF chromatin remodeling complexes as a therapeutic approach to transcription factor-dependent cancers [RNA-seq] |
| GSE241449 |
Pharmacologic inhibition of BAF chromatin remodeling complexes as a therapeutic approach to transcription factor-dependent cancers [WES] |
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| Relations |
| BioProject |
PRJNA1008162 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE241450_RAW.tar |
14.0 Gb |
(http)(custom) |
TAR (of BROADPEAK, BW, NARROWPEAK, TAB, VCF) |
SRA Run Selector |
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