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| Status |
Public on Sep 01, 2023 |
| Title |
Transcriptome profiling of lettuce plants exposed to abiotic stresses |
| Organism |
Lactuca sativa |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Lettuce is one of most consumed vegetables globally. This crop is susceptible to abiotic stresses. To understand the molecular mechanisms of stress response in lettuce, global transcriptome analysis was conducted. This analysis revealed distinctive temporal expression patterns among the stress-regulated genes in lettuce plants exposed to abiotic stresses
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| Overall design |
mRNA profiles for lettuce plants exposed to cold for 0h, 4h, 24h, or 7d or to heat, drought, and salt for 0h, 5h, 24h, 48h were generated in triplicate by Illumina RNA sequencing
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| Contributor(s) |
Park S, Mou B |
| Citation(s) |
38081919 |
| Submission date |
Aug 23, 2023 |
| Last update date |
Dec 22, 2023 |
| Contact name |
Sunchung Park |
| E-mail(s) |
Sunchung.park@usda.gov
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| Organization name |
USDA -ARS
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| Department |
ARS-NEA
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| Lab |
SPCL
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| Street address |
10300 Baltimore ave, Bldg001
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| City |
Beltsville |
| State/province |
MD |
| ZIP/Postal code |
20705 |
| Country |
USA |
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| Platforms (1) |
| GPL26895 |
Illumina HiSeq 4000 (Lactuca sativa) |
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| Samples (53)
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| Relations |
| BioProject |
PRJNA1008835 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE241604_Ls_PI284.UC_Cold_cpm_value.csv.gz |
2.7 Mb |
(ftp)(http) |
CSV |
| GSE241604_Ls_abiotic_cpm_value.csv.gz |
3.7 Mb |
(ftp)(http) |
CSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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