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Series GSE241648 Query DataSets for GSE241648
Status Public on May 01, 2024
Title Pharmaceutical inhibition of RAS overcomes cytokine mediated resistance to FLT3 inhibition in FLT3-ITD+ AML [DNaseI-seq]
Organism Homo sapiens
Experiment type Other
Summary AML is characterised by a variety of co-occurring driver mutations in genes associated with cell signallingand growth regulationsuch as the FLT3-ITD. Inhibitors targeting FLT3 (FLT3i) are beingused to treat FLT3-ITD+ patients but most relapse.By profiling the gene regulatory networks of samples from patients before and after FLT3i treatment weobservedan increase in AP-1 mediated and a loss of RUNX1 mediated connections in treatment resistant cells. Treatmentinducesupregulation of signalling pathway genesindicatingthat cytokines mediate resistance to FLT3i, with IL-3 playing a major role. IL3 rescues survival by counteracting FLT3i mediated globalRUNX1 degradation and adown-regulationof bindingof RUNX1 in chromatin.To identify inhibitors which bypass the RUNX1 barrier we inhibitedMAPK signalling with a novel pan-RAS inhibitor which overcomes cytokine mediated resistance.Our data show (I) that cytokinesinstructAML maintenance via the stabilisation of transcriptional regulators and (ii)pan-RAS drugs bypass thisbarrier, suggesting a novel approach to treatment of AML.
 
Overall design DNaseI-Seq of FLT3-ITD primary AML samples before and after treatment with a FLT3 inhibitor
 
Contributor(s) Keane P, Coleman D, Cockerill P, Bonifer C
Citation(s) 38638836
Submission date Aug 24, 2023
Last update date May 02, 2024
Contact name Peter Keane
E-mail(s) p.keane@bham.ac.uk
Organization name University of Birmingham
Department Institute for Cancer and Genomic Sciences
Street address Vincent Drive
City Birmingham
ZIP/Postal code B15 2TT
Country United Kingdom
 
Platforms (1)
GPL30173 NextSeq 2000 (Homo sapiens)
Samples (5)
GSM7732668 D552_ITD-15
GSM7732669 D578_ITD-15_FLT3i
GSM7732670 D631_ITD-16_FLT3i
This SubSeries is part of SuperSeries:
GSE241650 Pharmaceutical inhibition of RAS overcomes cytokine mediated resistance to FLT3 inhibition in FLT3-ITD+ AML
Relations
BioProject PRJNA1009057

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE241648_RAW.tar 1.2 Gb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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