NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE241857 Query DataSets for GSE241857
Status Public on Oct 16, 2023
Title Cereblon influences the timing of muscle differentiation in Ciona tadpoles
Organism Ciona intestinalis
Experiment type Expression profiling by high throughput sequencing
Summary Thalidomide has a dark history as a teratogen, but in recent years its derivates have been shown to function as a chemotherapeutic agent. These drugs bind cereblon (CRBN), the substrate receptor of an E3 ubiquitin ligase complex and modify its degradation targets. Despite these insights, remarkably little is known about the normal function of cereblon in development. Here we employ Ciona, an invertebrate chordate, to identify endogenous Crbn targets. In Ciona, Crbn is specifically expressed in developing muscles during tail elongation before they acquire contractile activity. Crbn expression is activated by Mrf, the ortholog of MYOD1, a transcription factor important for muscle differentiation. CRISPR/Cas9-mediated mutations of Crbn lead to precocious onset of muscle contractions. By contrast, overexpression of Crbn delays contractions and is associated with decreased expression of contractile protein genes such as troponin. This reduction is possibly due to reduced Mrf protein levels without altering Mrf mRNA levels. Our findings suggest that Myod and Crbn form a negative feedback loop to control the precision of muscle differentiation during tail elongation.
 
Overall design Single-cell transcriptomes from mid tailbud embryos expressing either membrane GFP in the tail muscle (control condition) or both membrane GFP and Cereblon (Crbn overexpression condition) were analyzed using Chromium Single Cell Gene Expression (10X GenomicsĀ©). 9854 cells for the control condition and 8540 cells for the Crbn overexpression condition, which include 212 and 174 muscle cells, respectively, were sequenced.
Web link https://www.pnas.org/doi/10.1073/pnas.2309989120#:~:text=In%20Ciona%2C%20Crbn%20is%20specifically,factor%20important%20for%20muscle%20differentiation.
 
Contributor(s) Lemaire LA, Long J, Levine M
Citation(s) 37856545
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 NS076542 Developmental Patterning of the Anterior Neural Plate in a Simple Chordate PRINCETON UNIVERSITY Michael Steven Levine
Submission date Aug 29, 2023
Last update date Jan 15, 2024
Contact name Laurence A. Lemaire
E-mail(s) laurence.lemaire@slu.edu
Organization name Saint Louis University
Department Biology
Lab Lemaire
Street address 3507 Laclede Ave
City St Louis
State/province MO
ZIP/Postal code 63103
Country USA
 
Platforms (1)
GPL29701 Illumina NovaSeq 6000 (Ciona intestinalis)
Samples (2)
GSM7744559 Cereblon_Control, scRNA-seq
GSM7744560 Cereblon_Overexpression, scRNA-seq
Relations
BioProject PRJNA1010347

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE241857_RAW.tar 90.5 Mb (http)(custom) TAR (of H5)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap