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Series GSE242174 Query DataSets for GSE242174
Status Public on Jan 17, 2024
Title Reconstructing the gene regulatory network that shaped the evolution of larval sensory structure with a long ciliary tuft in Cnidaria.
Organisms Aurelia aurita; Acropora millepora; Nematostella vectensis; Acropora tenuis
Experiment type Expression profiling by high throughput sequencing
Summary Cnidarians are the only non-bilaterian group to evolve ciliated larvae with an apical sensory organ integrated with neurons, possibly homologous to the bilaterians. Within cnidarians, an apical organ with a ciliary tuft is identified only in sea anemones. Whether this apical tuft has evolved independently in anthozoans or alternatively originated in the eumetazoans and was lost independently in specific groups of cnidarians and bilaterians is uncertain.
 
Overall design Here, we generated transcriptomes of the apical domain during the planula stage of four species representing three key groups of cnidarians: Aurelia aurita (medusozoan Scyphozoa), Nematostella vectensis (Actiniaria), and Acropora millepora & Acropora tenuis (Scleractinia). Using an ortholog-analysis approach, we revealed the active and dynamic anteroposterior gene regulatory network in all three cnidarian groups.
 
Contributor(s) Modepalli V, Gilbert E
Citation(s) 38152864
Submission date Sep 01, 2023
Last update date Jan 18, 2024
Contact name vengamanaidu modepalli
E-mail(s) vengamanaidumodepalli@gmail.com
Organization name Marine Biological Association of the UK
Department Cell and Molecular
Lab Dr Vengamanaidu Modepalli
Street address The Laboratory,Citadel Hill
City Plymouth, Devon
State/province ---
ZIP/Postal code PL1 2PB,
Country United Kingdom
 
Platforms (4)
GPL29226 Illumina NovaSeq 6000 (Nematostella vectensis)
GPL33727 Illumina NovaSeq 6000 (Acropora millepora)
GPL33728 Illumina NovaSeq 6000 (Acropora tenuis)
Samples (18)
GSM7750350 NVE_AO_I
GSM7750351 NVE_B_I
GSM7750352 NVE_AO_II
Relations
BioProject PRJNA1011903

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE242174_Acropora_millepora.fasta.gz 27.2 Mb (ftp)(http) FASTA
GSE242174_Acropora_tenuis.fasta.gz 19.8 Mb (ftp)(http) FASTA
GSE242174_Aurelia_aurita.fasta.gz 22.8 Mb (ftp)(http) FASTA
GSE242174_Nematostella_vectensis.fasta.gz 12.4 Mb (ftp)(http) FASTA
GSE242174_RAW.tar 2.2 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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