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Series GSE242875 Query DataSets for GSE242875
Status Public on Sep 12, 2023
Title Adaptive laboratory evolution of E. coli ndh gene deletion strain
Organism Escherichia coli
Experiment type Expression profiling by high throughput sequencing
Summary We have performed adaptive laboratory evolution of E. coli ndh gene deletion strain to examine the adaptive strategies of E. coli.
 
Overall design Growth of E. coli on M9 minimal media supplemented with 4g/l Glucose at 37C was performed with biological duplicates. Total RNA was extracted from mid-log phase culture for RNA-Seq library preparation.
 
Contributor(s) Anand A
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Submission date Sep 11, 2023
Last update date Sep 13, 2023
Contact name Amitesh Anand
E-mail(s) amitesh.anand@tifr.res.in
Phone 8097828348
Organization name TIFR
Department DBS
Lab ARG
Street address Homi Bhabha Road
City Mumbai
State/province Maharashtra
ZIP/Postal code 400005
Country India
 
Platforms (1)
GPL21433 Illumina HiSeq 4000 (Escherichia coli)
Samples (10)
GSM7774188 BOP27_ndh_1
GSM7774189 BOP27_ndh_2
GSM7774190 BOP27_ndh_A13F47-I1R1_1
Relations
BioProject PRJNA1015206

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE242875_ndh-ALE_RNAseq-tpm.csv.gz 241.3 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA

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