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| Status |
Public on May 23, 2011 |
| Title |
Time-course leaf expression data from Populus deltoides |
| Platform organism |
Populus sp. |
| Sample organism |
Populus deltoides |
| Experiment type |
Expression profiling by array
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| Summary |
We conducted micro-array analysis to quantify the global transcriptome variations in leaves through the course of the year allowing for identification of changing developmental signals. We used RNA samples from pre-formed and mature leaves in the upper crown of a sexually mature Populus deltoides tree 2 hours after sunrise.
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| Overall design |
Three independent samples of leaf/pre-formed leaf tissues were collected from the upper crown of a single sexually mature tree. RNA was extracted from tissues and hybridized on Affymetrix Genechip Poplar Genome Array. Tissues represented two batches (batch 1 from 2005 and batch 2 from 2006). Therefore, March samples were used to normalize the other month samples within the same batch.
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| Contributor(s) |
Pechanova O, Hsu C, Adams JP, Vandervelde L, Drnevich J, Jawdy S, Adeli A, Suttle JC, Lawrence AM, Tschaplinski TJ, Séguin A, Yuceer C |
| Citation(s) |
21653885, 21114852 |
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| Submission date |
Sep 24, 2010 |
| Last update date |
Nov 04, 2019 |
| Contact name |
Joshua Adams |
| E-mail(s) |
AdamsJ@uamont.edu
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| Phone |
8704601348
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| Organization name |
University of Arkansas-Monticello
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| Department |
Forest Resources
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| Street address |
PO Box 3468
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| City |
Monticello |
| State/province |
AR |
| ZIP/Postal code |
71656 |
| Country |
USA |
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| Platforms (1) |
| GPL4359 |
[Poplar] Affymetrix Poplar Genome Array |
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| Samples (24)
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| GSM600286 |
preformed leaf sample from September 2005, rep1 |
| GSM600287 |
preformed leaf sample from September 2005, rep2 |
| GSM600288 |
preformed leaf sample from September 2005, rep3 |
| GSM600289 |
preformed leaf sample from December 2005, rep1 |
| GSM600290 |
preformed leaf sample from December 2005, rep2 |
| GSM600291 |
preformed leaf sample from December 2005, rep3 |
| GSM600292 |
preformed leaf sample from February 2005, rep1 |
| GSM600293 |
preformed leaf sample from February 2005, rep2 |
| GSM600294 |
preformed leaf sample from February 2005, rep3 |
| GSM600295 |
preformed leaf sample from March 2005, rep1 |
| GSM600296 |
preformed leaf sample from March 2005, rep2 |
| GSM600297 |
preformed leaf sample from March 2005, rep3 |
| GSM600298 |
preformed leaf sample from March 2006, rep1 |
| GSM600299 |
preformed leaf sample from March 2006, rep2 |
| GSM600300 |
preformed leaf sample from March 2006, rep3 |
| GSM600301 |
leaf sample from April 2006, rep1 |
| GSM600302 |
leaf sample from April 2006, rep2 |
| GSM600303 |
leaf sample from April 2006, rep3 |
| GSM600304 |
leaf sample from May 2006, rep1 |
| GSM600305 |
leaf sample from May 2006, rep2 |
| GSM600306 |
leaf sample from May 2006, rep3 |
| GSM600307 |
leaf sample from June 2006, rep1 |
| GSM600308 |
leaf sample from June 2006, rep2 |
| GSM600309 |
leaf sample from June 2006, rep3 |
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| Relations |
| BioProject |
PRJNA132797 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE24349_RAW.tar |
114.5 Mb |
(http)(custom) |
TAR (of CEL) |
| Processed data included within Sample table |
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