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Series GSE243613 Query DataSets for GSE243613
Status Public on Mar 18, 2024
Title Herpesvirus remodel organization and function of mitochondria as infection proceeds
Organism Chlorocebus aethiops
Experiment type Expression profiling by high throughput sequencing
Other
Summary During the infection, viruses target mitochondria to promote viral replication. Infection-induced stress during the progression of infection leads to the regulation of antiviral defenses and mitochondrial metabolism which are opposed by counteractions of viral factors. The precise structural and functional changes that underlie how mitochondria react to the infection remain largely unclear. Our multimodal integration of advanced imaging, genomics, and metabolomics draws a comprehensive picture of time-dependent changes in mitochondria as HSV-1 infection proceeds from early to late infection.
 
Overall design Vero cells were infected with HSV1 and samples for GRO-Seq were collected 4 or 8 hours post infection.
 
Contributor(s) Mattola S, Niskanen H, Kaikkonen M, Mäntylä E, Vihinen-Ranta M
Citation(s) 38620036
Submission date Sep 20, 2023
Last update date Jun 28, 2024
Contact name Henri Niskanen
Organization name University of Eastern Finland
Department A.I. Virtanen Institute
Street address P.O. Box 1627
City Kuopio
ZIP/Postal code FI-70211
Country Finland
 
Platforms (1)
GPL24584 Illumina HiSeq 2000 (Chlorocebus aethiops)
Samples (6)
GSM7791877 Vero mock rep1
GSM7791878 Vero mock rep2
GSM7791879 Vero HSV1 4h rep1
Relations
BioProject PRJNA1019232

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE243613_gene_rpkm_table.txt.gz 2.0 Mb (ftp)(http) TXT
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Raw data are available in SRA

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