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| Status |
Public on Sep 24, 2024 |
| Title |
NanoString nCounter Cancer CN panel assay CNV detection of high-grade serous carcinoma samples |
| Organism |
Homo sapiens |
| Experiment type |
Genome variation profiling by genome tiling array
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| Summary |
CNVs detection using 13 samples’ pairs of (12 samples’ pairs of histologically confirmed diagnosis of high-grade serous carcinoma and one patient with endometrioid carcinoma and matching normal tissues. Samples have IHC status for p53, WT1, Ki-67, PAX-8, and TNM classification according to WHO Classification of Tumors.
Please cite the original atricle:
Grebnev, P.A.; Meshkov, I.O.; Ershov, P.V.; Makhotenko, A.V.; Azarian, V.B.; Erokhina, M.V.; Galeta, A.A.; Zakubanskiy, A.V.; Shingalieva, O.S.; Tregubova, A.V.; et al. Benchmarking of Approaches for Gene Copy-Number Variation Analysis and Its Utility for Genetic Aberration Detection in High-Grade Serous Ovarian Carcinomas. Cancers 2024, 16, 3252. https://doi.org/10.3390/cancers16193252
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| Overall design |
13 samples’ pairs, 12 samples’ pairs of histologically confirmed diagnosis of high-grade serous carcinoma and one patient with endometrioid carcinoma and matching normal tissues
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| Web link |
https://www.mdpi.com/2072-6694/16/19/3252
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| Contributor(s) |
Grebnev PA, Erokhina MV, Galeta AA, Zakubanskiy AV, Shingalieva OS, Tregubova AV, Asaturova AV, Snigir EA |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Sep 29, 2023 |
| Last update date |
Sep 25, 2024 |
| Contact name |
Pavel Grebnev |
| E-mail(s) |
grepavel@gmail.com, pgrebnev@cspfmba.ru
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| Phone |
+79856333971
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| Organization name |
CSP
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| Street address |
Pogodinskaya Street, 10, bld. 1, 119121 Moscow, Russia
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| City |
Moscow |
| State/province |
--- Select One --- |
| ZIP/Postal code |
119121 |
| Country |
Russia |
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| Platforms (1) |
| GPL33798 |
NanoString nCounter Cancer CN panel |
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| Samples (26)
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| Relations |
| BioProject |
PRJNA1022412 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE244329_RAW.tar |
200.0 Kb |
(http)(custom) |
TAR (of RCC) |
| GSE244329_readme.txt |
1.4 Kb |
(ftp)(http) |
TXT |
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