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| Status |
Public on Jan 31, 2024 |
| Title |
Role of quorum sensing of Hafnia alvei H4 in co-culture with Pseudomonas fluorescens ATCC13525 analyzed by biological and transcriptomic |
| Organisms |
Pseudomonas fluorescens; Hafnia alvei |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
transcriptomics was used to explore the regulation mechanism of QS in dual-species spoilage at mRNA molecular level.
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| Overall design |
The cocultures formed by duo-species (H. alvei H4 WT + P. fluorescens ACTT13525) and duo-species (H. alvei H4 ΔluxI +P. fluorescens ACTT13525) underwent RNA-seq.
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| Contributor(s) |
Wang Y, Li X, Hou H |
| Citation(s) |
38275703 |
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| Submission date |
Oct 19, 2023 |
| Last update date |
Jan 31, 2024 |
| Contact name |
Yanan Wang |
| E-mail(s) |
21173083200045@xy.dlpu.edu.cn
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| Organization name |
Dalian Polytechnic University
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| Lab |
School of Food Science and Technology
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| Street address |
Ganjingzi District
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| City |
Dalian |
| State/province |
Liaoning |
| ZIP/Postal code |
116034 |
| Country |
China |
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| Platforms (1) |
| GPL33855 |
Illumina NovaSeq 6000 (Hafnia alvei; Pseudomonas fluorescens) |
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| Samples (6)
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| GSM7849423 |
microorganism,mutant-coculture,24h,rep1 |
| GSM7849424 |
microorganism,mutant-coculture,24h,rep2 |
| GSM7849425 |
microorganism,mutant-coculture,24h,rep3 |
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| Relations |
| BioProject |
PRJNA1030010 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE245811_gene_count_-_.txt.gz |
479.0 Kb |
(ftp)(http) |
TXT |
| GSE245811_gene_fpkm_-.txt.gz |
647.7 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
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