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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 24, 2024 |
| Title |
XIST dampens X chromosome activity in a SPEN-dependent manner during early human development |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Other
Methylation profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
38834912 |
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| Submission date |
Oct 31, 2023 |
| Last update date |
Jul 24, 2024 |
| Contact name |
Claire Rougeulle |
| E-mail(s) |
claire.rougeulle@u-paris.fr
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| Organization name |
Université Paris Cité, CNRS
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| Department |
Epigenetics and Cell Fate
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| Street address |
35 rue Helene Brion
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| City |
Paris |
| ZIP/Postal code |
75013 |
| Country |
France |
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| Platforms (2) |
| GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (123)
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| GSM7873790 |
PXGL, H3K27ac, CRISPRi XIST UT, Rep1 |
| GSM7873791 |
PXGL, H3K4me3, CRISPRi XIST UT, Rep1 |
| GSM7873792 |
PXGL, H3K27me3, CRISPRi XIST UT, Rep1 |
| GSM7873793 |
PXGL, H3K9me3, CRISPRi XIST UT, Rep1 |
| GSM7873794 |
PXGL, H2AK119Ub, CRISPRi XIST UT, Rep1 |
| GSM7873795 |
PXGL, IgG, CRISPRi XIST UT, Rep1 |
| GSM7873796 |
PXGL, H3K27ac, CRISPRi XIST UT, Rep2 |
| GSM7873797 |
PXGL, H3K4me3, CRISPRi XIST UT, Rep2 |
| GSM7873798 |
PXGL, H3K27me3, CRISPRi XIST UT, Rep2 |
| GSM7873799 |
PXGL, H3K9me3, CRISPRi XIST UT, Rep2 |
| GSM7873800 |
PXGL, H2AK119Ub, CRISPRi XIST UT, Rep2 |
| GSM7873801 |
PXGL, IgG, CRISPRi XIST UT, Rep2 |
| GSM7873802 |
PXGL, H3K27ac, CRISPRi XIST UT, Rep3 |
| GSM7873803 |
PXGL, H3K4me3, CRISPRi XIST UT, Rep3 |
| GSM7873804 |
PXGL, H3K27me3, CRISPRi XIST UT, Rep3 |
| GSM7873805 |
PXGL, H3K9me3, CRISPRi XIST UT, Rep3 |
| GSM7873806 |
PXGL, H2AK119Ub, CRISPRi XIST UT, Rep3 |
| GSM7873807 |
PXGL, IgG, CRISPRi XIST UT, Rep3 |
| GSM7873808 |
PXGL, H3K27ac, CRISPRi XIST Dox, Rep1 |
| GSM7873809 |
PXGL, H3K4me3, CRISPRi XIST Dox, Rep1 |
| GSM7873810 |
PXGL, H3K27me3, CRISPRi XIST Dox, Rep1 |
| GSM7873811 |
PXGL, H3K9me3, CRISPRi XIST Dox, Rep1 |
| GSM7873812 |
PXGL, H2AK119Ub, CRISPRi XIST Dox, Rep1 |
| GSM7873813 |
PXGL, IgG, CRISPRi XIST Dox, Rep1 |
| GSM7873814 |
PXGL, H3K27ac, CRISPRi XIST Dox, Rep2 |
| GSM7873815 |
PXGL, H3K4me3, CRISPRi XIST Dox, Rep2 |
| GSM7873816 |
PXGL, H3K27me3, CRISPRi XIST Dox, Rep2 |
| GSM7873817 |
PXGL, H3K9me3, CRISPRi XIST Dox, Rep2 |
| GSM7873818 |
PXGL, H2AK119Ub, CRISPRi XIST Dox, Rep2 |
| GSM7873819 |
PXGL, IgG, CRISPRi XIST Dox, Rep2 |
| GSM7873820 |
PXGL, H3K27ac, CRISPRi XIST Dox, Rep3 |
| GSM7873821 |
PXGL, H3K4me3, CRISPRi XIST Dox, Rep3 |
| GSM7873822 |
PXGL, H3K27me3, CRISPRi XIST Dox, Rep3 |
| GSM7873823 |
PXGL, H3K9me3, CRISPRi XIST Dox, Rep3 |
| GSM7873824 |
PXGL, H2AK119Ub, CRISPRi XIST Dox, Rep3 |
| GSM7873825 |
PXGL, IgG, CRISPRi XIST Dox, Rep3 |
| GSM7873826 |
PXGL, H3K27ac, WT, Rep1 |
| GSM7873827 |
PXGL, H3K4me3, WT, Rep1 |
| GSM7873828 |
PXGL, H3K27me3, WT, Rep1 |
| GSM7873829 |
PXGL, H3K9me3, WT, Rep1 |
| GSM7873830 |
PXGL, H2AK119Ub, WT, Rep1 |
| GSM7873831 |
PXGL, IgG, WT, Rep1 |
| GSM7873832 |
PXGL, H3K27ac, KO, Rep1 |
| GSM7873833 |
PXGL, H3K4me3, KO, Rep1 |
| GSM7873834 |
PXGL, H3K27me3, KO, Rep1 |
| GSM7873835 |
PXGL, H3K9me3, KO, Rep1 |
| GSM7873836 |
PXGL, H2AK119Ub, KO, Rep1 |
| GSM7873837 |
PXGL, IgG, KO, Rep1 |
| GSM7873838 |
PXGL, H3K27ac, WT, Rep2 |
| GSM7873839 |
PXGL, H3K4me3, WT, Rep2 |
| GSM7873840 |
PXGL, H3K27me3, WT, Rep2 |
| GSM7873841 |
PXGL, H3K9me3, WT, Rep2 |
| GSM7873842 |
PXGL, H2AK119Ub, WT, Rep2 |
| GSM7873843 |
PXGL, IgG, WT, Rep2 |
| GSM7873844 |
PXGL, H3K27ac, KO, Rep2 |
| GSM7873845 |
PXGL, H3K4me3, KO, Rep2 |
| GSM7873846 |
PXGL, H3K27me3, KO, Rep2 |
| GSM7873847 |
PXGL, H3K9me3, KO, Rep2 |
| GSM7873848 |
PXGL, H2AK119Ub, KO, Rep2 |
| GSM7873849 |
PXGL, IgG, KO, Rep2 |
| GSM7873850 |
Primed, H3K4me3, Rep1 |
| GSM7873851 |
Primed, H3K27me3, Rep1 |
| GSM7873852 |
Primed, H3K9me3, Rep1 |
| GSM7873853 |
Primed, H2AK119Ub, Rep1 |
| GSM7873854 |
Primed, IgG, Rep1 |
| GSM7873855 |
Primed, H3K4me3, Rep2 |
| GSM7873856 |
Primed, H3K27me3, Rep2 |
| GSM7873857 |
Primed, H3K9me3, Rep2 |
| GSM7873858 |
Primed, H2AK119Ub, Rep2 |
| GSM7873859 |
Primed, IgG, Rep2 |
| GSM7873883 |
PXGL, fastGRO-seq CRISPRi XIST UT, Rep1 |
| GSM7873884 |
PXGL, fastGRO-seq CRISPRi XIST UT, Rep2 |
| GSM7873885 |
PXGL, fastGRO-seq CRISPRi XIST UT, Rep3 |
| GSM7873886 |
PXGL, fastGRO-seq CRISPRi XIST Dox, Rep1 |
| GSM7873887 |
PXGL, fastGRO-seq CRISPRi XIST Dox, Rep2 |
| GSM7873888 |
PXGL, fastGRO-seq CRISPRi XIST Dox, Rep3 |
| GSM7873894 |
PXGL, MeD, Rep1 |
| GSM7873895 |
PXGL, MeD, Rep2 |
| GSM7873896 |
PXGL, MeD, Rep3 |
| GSM7873897 |
Primed, RAP input, Rep1 |
| GSM7873898 |
Primed, RAP input, Rep2 |
| GSM7873899 |
Naive, RAP input, Rep1 |
| GSM7873900 |
Naive, RAP input, Rep2 |
| GSM7873901 |
Primed, RAP XIST, Rep1 |
| GSM7873902 |
Primed, RAP XIST, Rep2 |
| GSM7873903 |
Naive, RAP XIST, Rep1 |
| GSM7873904 |
Naive, RAP XIST, Rep2 |
| GSM7873905 |
PXGL, CRISPRi XIST UT, Rep1 |
| GSM7873906 |
PXGL, CRISPRi XIST UT, Rep2 |
| GSM7873907 |
PXGL, CRISPRi XIST UT, Rep3 |
| GSM7873908 |
PXGL, CRISPRi XIST Dox, Rep1 |
| GSM7873909 |
PXGL, CRISPRi XIST Dox, Rep2 |
| GSM7873910 |
PXGL, CRISPRi XIST Dox, Rep3 |
| GSM7873911 |
PXGL, WT, Rep1 |
| GSM7873912 |
PXGL, WT, Rep2 |
| GSM7873913 |
PXGL, WT, Rep3 |
| GSM7873914 |
PXGL, XIST KO, Rep1 |
| GSM7873915 |
PXGL, XIST KO, Rep2 |
| GSM7873916 |
PXGL, XIST KO, Rep3 |
| GSM7873917 |
PXGL, siScr, Rep1 |
| GSM7873918 |
PXGL, siScr, Rep2 |
| GSM7873919 |
PXGL, siScr, Rep3 |
| GSM7873920 |
PXGL, siSPEN1, Rep1 |
| GSM7873921 |
PXGL, siSPEN1, Rep2 |
| GSM7873922 |
PXGL, siSPEN1, Rep3 |
| GSM7873923 |
PXGL, siSPEN2, Rep1 |
| GSM7873924 |
PXGL, siSPEN2, Rep2 |
| GSM7873925 |
PXGL, siSPEN2, Rep3 |
| GSM7873926 |
Primed, WT, Rep1 |
| GSM7873927 |
Primed, WT, Rep2 |
| GSM7873928 |
Primed, WT, Rep3 |
| GSM7873929 |
NaiveCult, WT, Rep1 |
| GSM7873930 |
NaiveCult, WT, Rep2 |
| GSM7873931 |
NaiveCult, WT, Rep3 |
| GSM7873932 |
NaiveCult, XACTKO, Rep1 |
| GSM7873933 |
NaiveCult, XACTKO, Rep2 |
| GSM7873934 |
NaiveCult, XACTKO, Rep3 |
| GSM7937725 |
PXGL,DOX,ATAC,Rep1 |
| GSM7937726 |
PXGL,DOX,ATAC,Rep2 |
| GSM7937727 |
PXGL,DOX,ATAC,Rep3 |
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| This SuperSeries is composed of the following SubSeries:
|
| GSE246633 |
XIST dampens X chromosome activity in a SPEN-dependent manner during early human development [ATAC-seq] |
| GSE246634 |
XIST dampens X chromosome activity in a SPEN-dependent manner during early human development [CUT&RUN] |
| GSE246638 |
XIST dampens X chromosome activity in a SPEN-dependent manner during early human development [GRO-seq] |
| GSE246640 |
XIST dampens X chromosome activity in a SPEN-dependent manner during early human development [MeD-seq] |
| GSE246641 |
XIST dampens X chromosome activity in a SPEN-dependent manner during early human development [RAP-seq] |
| GSE246642 |
XIST dampens X chromosome activity in a SPEN-dependent manner during early human development [RNA-seq] |
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| Relations |
| BioProject |
PRJNA1034029 |
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