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Series GSE246710 Query DataSets for GSE246710
Status Public on Oct 28, 2024
Title Characterization of tumor microenvironment using single cell RNA sequencing in Lewis Lung Carcinoma cell transplantation mouse model
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The tumor microenvironment holds significant importance in cancer development and progression. Research conducted using mouse models of tumor cell transplantation can enhance our comprehension of the tissue microenvironment that allows tumor growth at an early stage. Among these models, those featuring the Lewis Lung Carcinoma (LLC) cell line are noteworthy due to their low immunogenic features. Since numerous cancer patients do not respond effectively to current immunotherapy, it is imperative to investigate models with low immunogenic features. Consequently, this study employed single-cell RNA sequencing on an orthotopic lung cancer mouse model utilizing the LLC cell line to profile the characteristics of diverse cell types that emerge in the lung during tumor engraftment. The lung microenvironment exhibited discernible transformations, including fibrogenic gene expression, increased cell-to-cell and cell-to-extracellular matrix adhesion, and reduced infiltration of T cells compared to lungs without tumor engraftment. In conclusion, these findings reveal cellular and molecular alterations that can be targeted for tumor prevention and treatment for low-immunogenic tumors.
 
Overall design Eight to nine-week-old week old female C57BL/6 mice were intracardially injected with 1 x 10⁴-1 x 10⁵ LL/2-Luc2 cells. The mice were sacrificed on days 19 to 24 after tumor injection. Tissue specimens were analyzed by H&E staining, scRNAseq(10x genemics).
 
Contributor(s) Lee H, Na M
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Submission date Oct 31, 2023
Last update date Oct 28, 2024
Contact name Minsu Na
E-mail(s) tn5098@naver.com
Organization name Catholic University of Korea
Street address Banpo-daero222
City Seoul
ZIP/Postal code 06594
Country South Korea
 
Platforms (1)
GPL21273 HiSeq X Ten (Mus musculus)
Samples (2)
GSM7875126 tumor negative, scRNA-seq
GSM7875127 tumor positive, scRNA-seq
Relations
BioProject PRJNA1034153

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE246710_RAW.tar 100.8 Mb (http)(custom) TAR (of TAR)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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